first commit

Rinstall.sh

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+#!/bin/bash
+
+echo "set time zone"
+
+# update indices
+sudo apt update -qq
+# install two helper packages we need
+sudo apt install --no-install-recommends software-properties-common dirmngr
+# add the signing key (by Michael Rutter) for these repos
+# To verify key, run gpg --show-keys /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
+# Fingerprint: E298A3A825C0D65DFD57CBB651716619E084DAB9
+wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
+# add the R 4.0 repo from CRAN -- adjust 'focal' to 'groovy' or 'bionic' as needed
+sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
+
+sudo apt-get install r-base -y
+

_bashrc

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+# ~/.bashrc: executed by bash(1) for non-login shells.
+# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
+# for examples
+alias ps="ps -xv"
+function newhuser(){
+	echo “create new user: “
+	echo “”
+	echo "sudo useradd -s /bin/bash -d /users/$1/  -m -G huser $1"
+	sudo useradd -s /bin/bash -d /users/$1/  -m -G huser $1
+
+	echo “sudo mkdir -p /scratch/$1”
+	sudo mkdir -p /scratch/$1
+
+	echo “sudo chown $1:  /scratch/$1”
+	sudo chown $1:  /scratch/$1
+
+	echo 	sudo chmod -R 750  /scratch/$1
+	sudo chmod -R 750  /scratch/$1
+
+	echo “”
+	echo “PASSWROD: ”
+	echo "sudo passwd $1"
+	sudo passwd $1
+}
+
+# If not running interactively, don't do anything
+case $- in
+    *i*) ;;
+      *) return;;
+esac
+
+# don't put duplicate lines or lines starting with space in the history.
+# See bash(1) for more options
+HISTCONTROL=ignoreboth
+
+# append to the history file, don't overwrite it
+shopt -s histappend
+
+# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
+HISTSIZE=1000
+HISTFILESIZE=2000
+
+# check the window size after each command and, if necessary,
+# update the values of LINES and COLUMNS.
+shopt -s checkwinsize
+
+# If set, the pattern "**" used in a pathname expansion context will
+# match all files and zero or more directories and subdirectories.
+#shopt -s globstar
+
+# make less more friendly for non-text input files, see lesspipe(1)
+[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
+
+# set variable identifying the chroot you work in (used in the prompt below)
+if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
+    debian_chroot=$(cat /etc/debian_chroot)
+fi
+
+# set a fancy prompt (non-color, unless we know we "want" color)
+case "$TERM" in
+    xterm-color|*-256color) color_prompt=yes;;
+esac
+
+# uncomment for a colored prompt, if the terminal has the capability; turned
+# off by default to not distract the user: the focus in a terminal window
+# should be on the output of commands, not on the prompt
+#force_color_prompt=yes
+
+if [ -n "$force_color_prompt" ]; then
+    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
+	# We have color support; assume it's compliant with Ecma-48
+	# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
+	# a case would tend to support setf rather than setaf.)
+	color_prompt=yes
+    else
+	color_prompt=
+    fi
+fi
+
+if [ "$color_prompt" = yes ]; then
+    PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
+else
+    PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
+fi
+unset color_prompt force_color_prompt
+
+# If this is an xterm set the title to user@host:dir
+case "$TERM" in
+xterm*|rxvt*)
+    PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
+    ;;
+*)
+    ;;
+esac
+
+# enable color support of ls and also add handy aliases
+if [ -x /usr/bin/dircolors ]; then
+    test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
+    alias ls='ls -lG  --color=auto'
+    #alias dir='dir --color=auto'
+    #alias vdir='vdir --color=auto'
+
+    alias grep='grep --color=auto'
+    alias fgrep='fgrep --color=auto'
+    alias egrep='egrep --color=auto'
+fi
+
+# colored GCC warnings and errors
+#export GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
+
+# some more ls aliases
+alias ll='ls -alF'
+alias la='ls -A'
+alias l='ls -CF'
+
+# Add an "alert" alias for long running commands.  Use like so:
+#   sleep 10; alert
+alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
+
+# Alias definitions.
+# You may want to put all your additions into a separate file like
+# ~/.bash_aliases, instead of adding them here directly.
+# See /usr/share/doc/bash-doc/examples in the bash-doc package.
+
+if [ -f ~/.bash_aliases ]; then
+    . ~/.bash_aliases
+fi
+
+# enable programmable completion features (you don't need to enable
+# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
+# sources /etc/bash.bashrc).
+if ! shopt -oq posix; then
+  if [ -f /usr/share/bash-completion/bash_completion ]; then
+    . /usr/share/bash-completion/bash_completion
+  elif [ -f /etc/bash_completion ]; then
+    . /etc/bash_completion
+  fi
+fi

bak/s3.munge.sh

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+#!/bin/bash
+
+# for SERVER only
+echo sudo rm -rf /etc/munge/munge.key
+sudo rm -rf /etc/munge/munge.key
+echo sudo mungekey
+sudo mungekey
+
+echo ""
+echo "copy munge to home folder"
+echo "sudo cp  /etc/munge/munge.key ~/config/files/munge.key"
+sudo cp  /etc/munge/munge.key ~/config/files/munge.key
+
+
+echo ""
+echo "change owner"
+echo "sudo chown munge:munge /etc/munge/munge.key"
+sudo chown munge:munge /etc/munge/munge.key
+
+
+echo ""
+echo "start munge"
+echo "sudo /etc/init.d/munge start"
+sudo /etc/init.d/munge start
+echo ""
+echo "===check status==="
+echo "systemctl status munge"
+systemctl status munge

cp2node.sh

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+#!/bin/bash
+#echo "scp -i ~/.ssh/id_rsa -r ~/config laoban@stor:~/"
+#scp -i ~/.ssh/id_rsa -r ~/config laoban@stor:~/
+echo "scp -i ~/.ssh/id_rsa -r ~/config laoban@cnx:~/"
+seq 8 | xargs -I XX  scp -i ~/.ssh/id_rsa -r ~/config laoban@cn0XX:~/
+
+
+echo scp -i ~/.ssh/id_rsa -r ~/config laoban@udesk:~/
+scp -i ~/.ssh/id_rsa -r ~/config laoban@udesk:~/

cpfnode.sh

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+#!/bin/bash
+
+echo scp -r laoban@10.0.1.100:~/config ~/
+scp -r laoban@10.0.1.100:~/config ~/
+

files/bak.hosts.txt

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+
+  
+# ==The nodes IB NETWORK =======
+10.0.2.150 stor
+10.0.2.150 xnode
+10.0.2.151 cn01
+10.0.2.152 cn02
+10.0.2.153 cn03
+10.0.2.154 cn04
+10.0.2.155 cn05
+10.0.2.156 cn06
+10.0.2.157 cn07
+10.0.2.158 cn08
+
+# ==The nodes ETHERNET PORT 1=======
+10.0.1.100 estor
+10.0.1.100 exnode
+10.0.1.101 ecn01
+10.0.1.102 ecn02
+10.0.1.103 ecn03
+10.0.1.104 ecn04
+10.0.1.105 ecn05
+10.0.1.106 ecn06
+10.0.1.107 ecn07
+10.0.1.108 ecn08
+# ==The nodes ETHERNET PORT 2=======
+10.0.1.150 e2stor
+10.0.1.150 e2xnode
+10.0.1.151 e2cn01
+10.0.1.152 e2cn02
+10.0.1.153 e2cn03
+10.0.1.154 e2cn04
+10.0.1.155 e2cn05
+10.0.1.156 e2cn06
+10.0.1.157 e2cn07
+10.0.1.158 e2cn08
+

files/bash.txt

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+export PATH=$PATH:/opt/slurm/bin:/opt/slurm/sbin
+

files/defaultdomain

@@ -0,0 +1 @@
+hpc.shud

files/exports

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+# /etc/exports: the access control list for filesystems which may be exported
+#		to NFS clients.  See exports(5).
+#
+# Example for NFSv2 and NFSv3:
+# /srv/homes       hostname1(rw,sync,no_subtree_check) hostname2(ro,sync,no_subtree_check)
+#
+# Example for NFSv4:
+# /srv/nfs4        gss/krb5i(rw,sync,fsid=0,crossmnt,no_subtree_check)
+# /srv/nfs4/homes  gss/krb5i(rw,sync,no_subtree_check)
+#
+
+/volume/data 10.0.1.1/24(rw,sync,no_root_squash,no_subtree_check)
+/volume/users 10.0.1.1/24(rw,sync,no_root_squash,no_subtree_check)
+/volume/scratch 10.0.1.1/24(rw,sync,no_root_squash,no_subtree_check)
+/opt 10.0.1.1/24(rw,sync,no_root_squash,no_subtree_check)
+

files/fstab.cn.txt

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+
+xnode:/opt /opt  nfs nfsvers=3 0 0
+stor:/volume/users /users nfs nfsvers=3 0 0
+stor:/volume/data /data nfs nfsvers=3 1 0
+stor:/volume/scratch /scratch nfs nfsvers=3 0 0

files/fstab.txt

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+
+
+stor:/volume/data /data nfs default,rw,_netdev 0 0
+stor:/volume/users /users nfs default,rw,_netdev 0 0
+stor:/volume/scratch /scratch nfs default,rw,_netdev 0 0
+
+#nas:/ /nas/ nfs nfsvers=3,noauto 0 0
+nas:/volume1/SpatialData /nas/SpatialData nfs nfsvers=3,rw,user,noauto 0 0
+nas:/volume1/ForcingData /nas/ForcingData nfs nfsvers=3,rw,user,noauto 0 0
+nas:/volume1/Shared /nas/Shared nfs nfsvers=3,rw,user,noauto 0 0
+nas:/volume1/Download /nas/Download nfs nfsvers=3,rw,user,noauto 0 0
+
+xnode:/opt /opt nfs default,rw,_netdev 0 0

files/hosts.txt

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+
+10.0.1.11 udesk  
+# ==The nodes IB NETWORK =======
+10.0.2.100 stor
+10.0.2.100 xnode
+10.0.2.101 cn01
+10.0.2.102 cn02
+10.0.2.103 cn03
+10.0.2.104 cn04
+10.0.2.105 cn05
+10.0.2.106 cn06
+10.0.2.107 cn07
+10.0.2.108 cn08
+
+# ==The nodes ETHERNET PORT 1=======
+10.0.1.100 estor
+10.0.1.100 exnode
+10.0.1.101 ecn01
+10.0.1.102 ecn02
+10.0.1.103 ecn03
+10.0.1.104 ecn04
+10.0.1.105 ecn05
+10.0.1.106 ecn06
+10.0.1.107 ecn07
+10.0.1.108 ecn08

files/nis

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+#
+# /etc/defaults/nis	Optional configuration settings for the NIS programs.
+#
+
+#
+# The following two variables are still used in the init script, but
+# ignored by systemd. See `nis.debian.howto` in the documentation
+# directory for more information.
+#
+# Are we a NIS server and if so what kind (values: false, slave, master)?
+NISSERVER=master
+# Are we a NIS client?
+NISCLIENT=false
+
+# Location of the master NIS password file (for yppasswdd).
+# If you change this make sure it matches with /var/yp/Makefile.
+YPPWDDIR=/etc
+
+# Do we allow the user to use ypchsh and/or ypchfn ? The YPCHANGEOK
+# fields are passed with -e to yppasswdd, see it's manpage.
+# Possible values: "chsh", "chfn", "chsh,chfn"
+YPCHANGEOK=chsh
+
+# NIS master server.  If this is configured on a slave server then ypinit
+# will be run each time NIS is started.
+NISMASTER=
+
+# Additional options to be given to ypserv when it is started.
+YPSERVARGS=
+
+# Additional options to be given to ypbind when it is started.
+YPBINDARGS=
+
+# Additional options to be given to yppasswdd when it is started.  Note
+# that if -p is set then the YPPWDDIR above should be empty.
+YPPASSWDDARGS=
+
+# Additional options to be given to ypxfrd when it is started.
+YPXFRDARGS=

files/nis.client

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+#
+# /etc/defaults/nis	Optional configuration settings for the NIS programs.
+#
+
+#
+# The following two variables are still used in the init script, but
+# ignored by systemd. See `nis.debian.howto` in the documentation
+# directory for more information.
+#
+# Are we a NIS server and if so what kind (values: false, slave, master)?
+NISSERVER=false
+# Are we a NIS client?
+NISCLIENT=true
+
+# Location of the master NIS password file (for yppasswdd).
+# If you change this make sure it matches with /var/yp/Makefile.
+YPPWDDIR=/etc
+
+# Do we allow the user to use ypchsh and/or ypchfn ? The YPCHANGEOK
+# fields are passed with -e to yppasswdd, see it's manpage.
+# Possible values: "chsh", "chfn", "chsh,chfn"
+YPCHANGEOK=chsh
+
+# NIS master server.  If this is configured on a slave server then ypinit
+# will be run each time NIS is started.
+NISMASTER=
+
+# Additional options to be given to ypserv when it is started.
+YPSERVARGS=
+
+# Additional options to be given to ypbind when it is started.
+YPBINDARGS=
+
+# Additional options to be given to yppasswdd when it is started.  Note
+# that if -p is set then the YPPWDDIR above should be empty.
+YPPASSWDDARGS=
+
+# Additional options to be given to ypxfrd when it is started.
+YPXFRDARGS=

files/nis.server

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+#
+# /etc/defaults/nis	Optional configuration settings for the NIS programs.
+#
+
+#
+# The following two variables are still used in the init script, but
+# ignored by systemd. See `nis.debian.howto` in the documentation
+# directory for more information.
+#
+# Are we a NIS server and if so what kind (values: false, slave, master)?
+NISSERVER=master
+# Are we a NIS client?
+NISCLIENT=false
+
+# Location of the master NIS password file (for yppasswdd).
+# If you change this make sure it matches with /var/yp/Makefile.
+YPPWDDIR=/etc
+
+# Do we allow the user to use ypchsh and/or ypchfn ? The YPCHANGEOK
+# fields are passed with -e to yppasswdd, see it's manpage.
+# Possible values: "chsh", "chfn", "chsh,chfn"
+YPCHANGEOK=chsh
+
+# NIS master server.  If this is configured on a slave server then ypinit
+# will be run each time NIS is started.
+NISMASTER=
+
+# Additional options to be given to ypserv when it is started.
+YPSERVARGS=
+
+# Additional options to be given to ypbind when it is started.
+YPBINDARGS=
+
+# Additional options to be given to yppasswdd when it is started.  Note
+# that if -p is set then the YPPWDDIR above should be empty.
+YPPASSWDDARGS=
+
+# Additional options to be given to ypxfrd when it is started.
+YPXFRDARGS=

files/nodeenv.sh

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+# for update env variables for comput node.
+
+
+export PATH="$PATH:/opt/R/bin/"
+export PATH="$PATH:/opt/bin/"
+export PATH="$PATH:/opt/Modules/bin"
+

files/on.yaml

@@ -0,0 +1,31 @@
+# This is the network config written by 'subiquity'
+network:
+  ethernets:
+    enp94s0f0:
+      dhcp4: no
+      addresses: [10.0.1.101/24]
+      routes:
+        - to: 10.0.1.1
+      nameservers:
+        addresses: [159.226.8.6,159.226.8.7]
+      optional: true
+    enp94s0f1:
+      dhcp4: no
+      addresses: [10.0.1.151/24]
+      routes:
+        - to: default
+          via: 10.0.1.1
+      nameservers:
+        addresses: [159.226.8.6,159.226.8.7]
+      optional: true    
+    ibp24s0:
+      dhcp4: no
+      dhcp6: no
+      addresses: [10.0.2.101/24]      
+      optional: true
+    ibp24s0d1:
+      dhcp4: no
+      dhcp6: no
+      addresses: [10.0.2.151/24]      
+      optional: true
+  version: 2

files/slurm.conf

@@ -0,0 +1,154 @@
+#
+# Example slurm.conf file. Please run configurator.html
+# (in doc/html) to build a configuration file customized
+# for your environment.
+#
+#
+# slurm.conf file generated by configurator.html.
+# Put this file on all nodes of your cluster.
+# See the slurm.conf man page for more information.
+#
+ClusterName=shudHPC
+SlurmctldHost=xnode
+#SlurmctldHost=
+#
+#DisableRootJobs=NO
+#EnforcePartLimits=NO
+#Epilog=
+#EpilogSlurmctld=
+#FirstJobId=1
+#MaxJobId=67043328
+#GresTypes=
+#GroupUpdateForce=0
+#GroupUpdateTime=600
+#JobFileAppend=0
+#JobRequeue=1
+#JobSubmitPlugins=lua
+#KillOnBadExit=0
+#LaunchType=launch/slurm
+#Licenses=foo*4,bar
+#MailProg=/bin/mail
+#MaxJobCount=10000
+#MaxStepCount=40000
+#MaxTasksPerNode=512
+MpiDefault=none
+#MpiParams=ports=#-#
+#PluginDir=
+#PlugStackConfig=
+#PrivateData=jobs
+ProctrackType=proctrack/cgroup
+#Prolog=
+#PrologFlags=
+#PrologSlurmctld=
+#PropagatePrioProcess=0
+#PropagateResourceLimits=
+#PropagateResourceLimitsExcept=
+#RebootProgram=
+ReturnToService=1
+SlurmctldPidFile=/var/run/slurmctld.pid
+SlurmctldPort=6817
+SlurmdPidFile=/var/run/slurmd.pid
+SlurmdPort=6818
+SlurmdSpoolDir=/var/spool/slurmd
+#SlurmUser=slurm
+#SlurmdUser=root
+#SrunEpilog=
+#SrunProlog=
+StateSaveLocation=/var/spool/slurmctld
+SwitchType=switch/none
+#TaskEpilog=
+TaskPlugin=task/affinity
+#TaskProlog=
+#TopologyPlugin=topology/tree
+#TmpFS=/tmp
+#TrackWCKey=no
+#TreeWidth=
+#UnkillableStepProgram=
+#UsePAM=0
+#
+#
+# TIMERS
+#BatchStartTimeout=10
+#CompleteWait=0
+#EpilogMsgTime=2000
+#GetEnvTimeout=2
+#HealthCheckInterval=0
+#HealthCheckProgram=
+InactiveLimit=0
+KillWait=30
+#MessageTimeout=10
+#ResvOverRun=0
+MinJobAge=300
+#OverTimeLimit=0
+SlurmctldTimeout=120
+SlurmdTimeout=300
+#UnkillableStepTimeout=60
+#VSizeFactor=0
+Waittime=0
+#
+#
+# SCHEDULING
+#DefMemPerCPU=0
+#MaxMemPerCPU=0
+#SchedulerTimeSlice=30
+SchedulerType=sched/backfill
+SelectType=select/cons_tres
+SelectTypeParameters=CR_Core
+#
+#
+# JOB PRIORITY
+#PriorityFlags=
+#PriorityType=priority/basic
+#PriorityDecayHalfLife=
+#PriorityCalcPeriod=
+#PriorityFavorSmall=
+#PriorityMaxAge=
+#PriorityUsageResetPeriod=
+#PriorityWeightAge=
+#PriorityWeightFairshare=
+#PriorityWeightJobSize=
+#PriorityWeightPartition=
+#PriorityWeightQOS=
+#
+#
+# LOGGING AND ACCOUNTING
+#AccountingStorageEnforce=0
+#AccountingStorageHost=
+#AccountingStoragePass=
+#AccountingStoragePort=
+AccountingStorageType=accounting_storage/slurmdbd
+#AccountingStorageUser=
+#AccountingStoreFlags=
+#JobCompHost=
+#JobCompLoc=
+#JobCompPass=
+#JobCompPort=
+JobCompType=jobcomp/none
+#JobCompUser=
+#JobContainerType=job_container/none
+JobAcctGatherFrequency=30
+JobAcctGatherType=jobacct_gather/none
+SlurmctldDebug=info
+SlurmctldLogFile=/var/log/slurmctld.log
+SlurmdDebug=info
+SlurmdLogFile=/var/log/slurmd.log
+#SlurmSchedLogFile=
+#SlurmSchedLogLevel=
+#DebugFlags=
+#
+#
+# POWER SAVE SUPPORT FOR IDLE NODES (optional)
+#SuspendProgram=
+#ResumeProgram=
+#SuspendTimeout=
+#ResumeTimeout=
+#ResumeRate=
+#SuspendExcNodes=
+#SuspendExcParts=
+#SuspendRate=
+#SuspendTime=
+#
+#
+# COMPUTE NODES
+NodeName=cn[01-16] CPUs=40 RealMemory=192000 Sockets=2 CoresPerSocket=20 ThreadsPerCore=1 State=IDLE 
+PartitionName=suan Nodes=cn[01-16] Default=YES MaxTime=14400 State=UP

files/slurmctld.service

@@ -0,0 +1,21 @@
+[Unit]
+Description=Slurm controller daemon
+After=network-online.target munge.service
+Wants=network-online.target
+ConditionPathExists=/opt/slurm/etc/slurm.conf
+
+[Service]
+Type=simple
+EnvironmentFile=-/etc/sysconfig/slurmctld
+ExecStart=/opt/slurm/sbin/slurmctld -D -s $SLURMCTLD_OPTIONS
+ExecReload=/bin/kill -HUP $MAINPID
+LimitNOFILE=65536
+TasksMax=infinity
+
+# Uncomment the following lines to disable logging through journald.
+# NOTE: It may be preferable to set these through an override file instead.
+#StandardOutput=null
+#StandardError=null
+
+[Install]
+WantedBy=multi-user.target

files/slurmd.service

@@ -0,0 +1,25 @@
+[Unit]
+Description=Slurm node daemon
+After=munge.service network-online.target remote-fs.target
+Wants=network-online.target
+#ConditionPathExists=/opt/slurm/etc/slurm.conf
+
+[Service]
+Type=simple
+EnvironmentFile=-/etc/sysconfig/slurmd
+ExecStart=/opt/slurm/sbin/slurmd -D -s $SLURMD_OPTIONS
+ExecReload=/bin/kill -HUP $MAINPID
+KillMode=process
+LimitNOFILE=131072
+LimitMEMLOCK=infinity
+LimitSTACK=infinity
+Delegate=yes
+TasksMax=infinity
+
+# Uncomment the following lines to disable logging through journald.
+# NOTE: It may be preferable to set these through an override file instead.
+#StandardOutput=null
+#StandardError=null
+
+[Install]
+WantedBy=multi-user.target

files/slurmdbd.service

@@ -0,0 +1,21 @@
+[Unit]
+Description=Slurm DBD accounting daemon
+After=network-online.target munge.service mysql.service mysqld.service mariadb.service
+Wants=network-online.target
+ConditionPathExists=/opt/slurm/etc/slurmdbd.conf
+
+[Service]
+Type=simple
+EnvironmentFile=-/etc/sysconfig/slurmdbd
+ExecStart=/opt/slurm/sbin/slurmdbd -D -s $SLURMDBD_OPTIONS
+ExecReload=/bin/kill -HUP $MAINPID
+LimitNOFILE=65536
+TasksMax=infinity
+
+# Uncomment the following lines to disable logging through journald.
+# NOTE: It may be preferable to set these through an override file instead.
+#StandardOutput=null
+#StandardError=null
+
+[Install]
+WantedBy=multi-user.target

files/slurmrestd.service

@@ -0,0 +1,18 @@
+[Unit]
+Description=Slurm REST daemon
+After=network-online.target munge.service slurmctld.service
+Wants=network-online.target
+ConditionPathExists=/opt/slurm/etc/slurm.conf
+
+[Service]
+Type=simple
+EnvironmentFile=-/etc/sysconfig/slurmrestd
+# Default to local auth via socket
+ExecStart=/opt/slurm/sbin/slurmrestd $SLURMRESTD_OPTIONS unix:/opt/slurm/com/slurmrestd.socket
+# Uncomment to enable listening mode
+#Environment="SLURM_JWT=daemon"
+#ExecStart=/opt/slurm/sbin/slurmrestd $SLURMRESTD_OPTIONS 0.0.0.0:6820
+ExecReload=/bin/kill -HUP $MAINPID
+
+[Install]
+WantedBy=multi-user.target

files/xnode.yaml

@@ -0,0 +1,19 @@
+# This is the network config written by 'subiquity'
+network:
+  ethernets:
+    enp94s0f0np0:
+      dhcp4: no
+      addresses: [210.72.80.22/24]
+      routes:
+        - to: default
+          via: 210.72.80.254
+      nameservers:
+        addresses: [159.226.8.6,159.226.8.7]
+      optional: true
+    enp94s0f1np1:
+      dhcp4: no
+      addresses: [10.0.1.30/26]
+      routes:
+        - to: 10.0.1.1
+      optional: true
+  version: 2

files/yp.conf

@@ -0,0 +1,14 @@
+#
+# yp.conf	Configuration file for the ypbind process. You can define
+#		NIS servers manually here if they can't be found by
+#		broadcasting on the local net (which is the default).
+#
+#		See the manual page of ypbind for the syntax of this file.
+#
+# IMPORTANT:	For the "ypserver", use IP addresses, or make sure that
+#		the host is in /etc/hosts. This file is only interpreted
+#		once, and if DNS isn't reachable yet the ypserver cannot
+#		be resolved and ypbind won't ever bind to the server.
+
+# ypserver ypserver.network.com
+ypserver xnode

files/ypserv.securenets

@@ -0,0 +1,18 @@
+#
+# securenets	This file defines the access rights to your NIS server
+#		for NIS clients. This file contains netmask/network
+#		pairs. A clients IP address needs to match with at least
+#		one of those.
+#
+#		One can use the word "host" instead of a netmask of
+#		255.255.255.255. Only IP addresses are allowed in this
+#		file, not hostnames.
+#
+# Always allow access for localhost, IPv4 and IPv6
+255.0.0.0	127.0.0.0
+host		::1
+
+# This lines gives access to everybody. PLEASE ADJUST!
+#0.0.0.0		0.0.0.0
+255.255.255.192		10.0.1.0
+::/0

ib.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo sudo apt update
+sudo apt update
+echo sudo apt install  -y ibverbs-utils  infiniband-diags
+sudo apt install  -y ibverbs-utils  infiniband-diag net-tools
+
+
+
+echo sudo /etc/init.d/openibd restart
+sudo /etc/init.d/openibd restart
+
+
+ofed_info -s
+ibdev2netdev
+ip a
+

netoff.sh

@@ -0,0 +1,9 @@
+#!/bin/bash
+
+echo sudo cp ~/off.yaml /etc/netplan/00-installer-config.yaml 
+sudo cp ~/off.yaml /etc/netplan/00-installer-config.yaml 
+
+echo sudo netplan apply
+sudo netplan apply
+sleep 5
+ping -c4 xnode

neton.sh

@@ -0,0 +1,9 @@
+#!/bin/bash
+
+echo sudo cp ~/on.yaml /etc/netplan/00-installer-config.yaml
+sudo cp ~/on.yaml /etc/netplan/00-installer-config.yaml
+
+echo sudo netplan apply
+sudo netplan apply
+sleep 5
+ping  -c4 210.72.80.22

nis.client.sh

@@ -0,0 +1,28 @@
+#!/bin/bash
+
+echo sudo cp ~/config/nis/defaultdomain  /etc/defaultdomain
+sudo cp ~/config/nis/defaultdomain  /etc/defaultdomain
+
+# 编辑/etc/default/nis，将NISCLIENT=false改为true
+echo sudo cp ~/config/nis/nis.client /etc/default/nis
+sudo cp ~/config/nis/nis.client /etc/default/nis
+
+# 编辑/etc/yp.conf，指定nis服务器
+echo sudo cp ~/config/nis/yp.conf /etc/yp.conf
+sudo cp ~/config/nis/yp.conf /etc/yp.conf
+
+# 编辑/etc/nsswitch.conf，注释原有的passwd、shadow、group，增加以下内容
+echo sudo cp ~/config/nis/nsswitch.conf /etc/nsswitch.conf
+sudo cp ~/config/nis/nsswitch.conf /etc/nsswitch.conf
+
+sudo systemctl stop ypbind
+echo sudo systemctl start ypbind
+sudo systemctl start ypbind
+echo sudo systemctl enable ypbind
+sudo systemctl enable ypbind
+sleep 3 
+
+echo sudo systemctl status ypbind
+sudo systemctl status ypbind
+
+

nis.server.sh

@@ -0,0 +1,38 @@
+#!/bin/bash
+# 安装和启动rpcbind, nis
+echo sudo apt-get install rpcbind nis -y
+sudo apt-get install rpcbind nis -y
+
+echo systemctl enable rpcbind
+sudo systemctl enable rpcbind
+
+echo systemctl start rpcbind
+sudo systemctl start rpcbind
+
+# 设置nis域名
+echo sudp cp ~/config/nis/defaultdomain /etc/defaultdomain
+sudp cp ~/config/nis/defaultdomain /etc/defaultdomain
+
+# 编辑/etc/default/nis，将NISCLIENT=false改为true
+echo "sudo cp ~/config/nis/nis.server /etc/default/nis"
+sudo cp ~/config/nis/nis.server /etc/default/nis
+
+# 编辑/etc/yp.conf，指定nis服务器
+echo sudo cp ~/config/nis/yp.conf /etc/yp.conf
+sudo cp ~/config/nis/yp.conf /etc/yp.conf
+
+# NIS 访问IP
+echo "sudo cp ~/config/nis/ypserv.securenets /etc/ypserv.securenets"
+sudo cp ~/config/nis/ypserv.securenets /etc/ypserv.securenets
+
+# 初始化数据库   #出现提示按Ctrl+D或回车
+echo sudo /usr/lib/yp/ypinit -m  
+sudo /usr/lib/yp/ypinit -m  
+
+# 启动ypserv
+echo systemctl start ypserv
+sudo systemctl start ypserv
+
+echo systemctl enable ypserv
+sudo systemctl enable ypserv
+

nis/defaultdomain

@@ -0,0 +1 @@
+hpc.shud

nis/nis

@@ -0,0 +1,39 @@
+#
+# /etc/defaults/nis	Optional configuration settings for the NIS programs.
+#
+
+#
+# The following two variables are still used in the init script, but
+# ignored by systemd. See `nis.debian.howto` in the documentation
+# directory for more information.
+#
+# Are we a NIS server and if so what kind (values: false, slave, master)?
+NISSERVER=master
+# Are we a NIS client?
+NISCLIENT=false
+
+# Location of the master NIS password file (for yppasswdd).
+# If you change this make sure it matches with /var/yp/Makefile.
+YPPWDDIR=/etc
+
+# Do we allow the user to use ypchsh and/or ypchfn ? The YPCHANGEOK
+# fields are passed with -e to yppasswdd, see it's manpage.
+# Possible values: "chsh", "chfn", "chsh,chfn"
+YPCHANGEOK=chsh
+
+# NIS master server.  If this is configured on a slave server then ypinit
+# will be run each time NIS is started.
+NISMASTER=
+
+# Additional options to be given to ypserv when it is started.
+YPSERVARGS=
+
+# Additional options to be given to ypbind when it is started.
+YPBINDARGS=
+
+# Additional options to be given to yppasswdd when it is started.  Note
+# that if -p is set then the YPPWDDIR above should be empty.
+YPPASSWDDARGS=
+
+# Additional options to be given to ypxfrd when it is started.
+YPXFRDARGS=

nis/nis.client

@@ -0,0 +1,39 @@
+#
+# /etc/defaults/nis	Optional configuration settings for the NIS programs.
+#
+
+#
+# The following two variables are still used in the init script, but
+# ignored by systemd. See `nis.debian.howto` in the documentation
+# directory for more information.
+#
+# Are we a NIS server and if so what kind (values: false, slave, master)?
+NISSERVER=false
+# Are we a NIS client?
+NISCLIENT=true
+
+# Location of the master NIS password file (for yppasswdd).
+# If you change this make sure it matches with /var/yp/Makefile.
+YPPWDDIR=/etc
+
+# Do we allow the user to use ypchsh and/or ypchfn ? The YPCHANGEOK
+# fields are passed with -e to yppasswdd, see it's manpage.
+# Possible values: "chsh", "chfn", "chsh,chfn"
+YPCHANGEOK=chsh
+
+# NIS master server.  If this is configured on a slave server then ypinit
+# will be run each time NIS is started.
+NISMASTER=
+
+# Additional options to be given to ypserv when it is started.
+YPSERVARGS=
+
+# Additional options to be given to ypbind when it is started.
+YPBINDARGS=
+
+# Additional options to be given to yppasswdd when it is started.  Note
+# that if -p is set then the YPPWDDIR above should be empty.
+YPPASSWDDARGS=
+
+# Additional options to be given to ypxfrd when it is started.
+YPXFRDARGS=

nis/nis.server

@@ -0,0 +1,39 @@
+#
+# /etc/defaults/nis	Optional configuration settings for the NIS programs.
+#
+
+#
+# The following two variables are still used in the init script, but
+# ignored by systemd. See `nis.debian.howto` in the documentation
+# directory for more information.
+#
+# Are we a NIS server and if so what kind (values: false, slave, master)?
+NISSERVER=master
+# Are we a NIS client?
+NISCLIENT=false
+
+# Location of the master NIS password file (for yppasswdd).
+# If you change this make sure it matches with /var/yp/Makefile.
+YPPWDDIR=/etc
+
+# Do we allow the user to use ypchsh and/or ypchfn ? The YPCHANGEOK
+# fields are passed with -e to yppasswdd, see it's manpage.
+# Possible values: "chsh", "chfn", "chsh,chfn"
+YPCHANGEOK=chsh
+
+# NIS master server.  If this is configured on a slave server then ypinit
+# will be run each time NIS is started.
+NISMASTER=
+
+# Additional options to be given to ypserv when it is started.
+YPSERVARGS=
+
+# Additional options to be given to ypbind when it is started.
+YPBINDARGS=
+
+# Additional options to be given to yppasswdd when it is started.  Note
+# that if -p is set then the YPPWDDIR above should be empty.
+YPPASSWDDARGS=
+
+# Additional options to be given to ypxfrd when it is started.
+YPXFRDARGS=

nis/nsswitch.conf

@@ -0,0 +1,20 @@
+# /etc/nsswitch.conf
+#
+# Example configuration of GNU Name Service Switch functionality.
+# If you have the `glibc-doc-reference' and `info' packages installed, try:
+# `info libc "Name Service Switch"' for information about this file.
+
+passwd: files nis systemd
+group:  files nis systemd
+shadow: files nis 
+hosts:  files nis dns  myhostname
+
+gshadow:        files
+networks:       files
+
+protocols:      db files
+services:       db files
+ethers:         db files
+rpc:            db files
+
+netgroup:       nis

nis/yp.conf

@@ -0,0 +1,14 @@
+#
+# yp.conf	Configuration file for the ypbind process. You can define
+#		NIS servers manually here if they can't be found by
+#		broadcasting on the local net (which is the default).
+#
+#		See the manual page of ypbind for the syntax of this file.
+#
+# IMPORTANT:	For the "ypserver", use IP addresses, or make sure that
+#		the host is in /etc/hosts. This file is only interpreted
+#		once, and if DNS isn't reachable yet the ypserver cannot
+#		be resolved and ypbind won't ever bind to the server.
+
+# ypserver ypserver.network.com
+ypserver xnode

nis/ypserv.securenets

@@ -0,0 +1,19 @@
+#
+# securenets	This file defines the access rights to your NIS server
+#		for NIS clients. This file contains netmask/network
+#		pairs. A clients IP address needs to match with at least
+#		one of those.
+#
+#		One can use the word "host" instead of a netmask of
+#		255.255.255.255. Only IP addresses are allowed in this
+#		file, not hostnames.
+#
+# Always allow access for localhost, IPv4 and IPv6
+255.0.0.0	127.0.0.0
+#host		::1
+
+# This lines gives access to everybody. PLEASE ADJUST!
+#0.0.0.0		0.0.0.0
+255.255.255.0		10.0.2.0
+255.255.255.0		10.0.1.0
+#::/0

s1.host.sh

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+echo "================old file:================"
+cat /etc/hosts
+echo "================hosts.txt================"
+cat files/hosts.txt
+echo ""
+read -r -p "Do you want to append the host.txt? [y/N] " input
+ 
+case $input in
+      [yY][eE][sS]|[yY])
+        echo "You say Yes"
+	echo "================do job ...================"
+	cat files/hosts.txt | sudo tee -a /etc/hosts
+
+	echo "================new file:"================
+	cat /etc/hosts
+	 ;;
+      [nN][oO]|[nN])
+            echo "You say No"
+            ;;
+      *)
+            echo "skip"
+            exit 1
+            ;;
+esac
+
+
+
+

s2.install.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+echo "set time zone"
+echo "sudo timedatectl set-timezone Asia/Shanghai"
+sudo timedatectl set-timezone Asia/Shanghai
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo sudo apt update
+sudo apt update
+#  +++++++++++++++++++++++++++++++++++++++
+echo ""
+echo sudo apt install munge slurm-wlm  nfs-common nfs-server nis gdal-bin libgdal-dev mailutils -y
+sudo apt install munge slurm-wlm slurmd nfs-common nfs-server nis gdal-bin libgdal-dev mailutils -y
+
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo sudo apt install iperf3 -y
+sudo apt install iperf3 -y
+
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo ""
+echo "Install gcc etc."
+echo "sudo apt install gcc g++ gfortran openmpi-bin   libomp-dev -y"
+sudo apt install gcc g++ gfortran openmpi-bin cmake libomp-dev -y
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo ""
+sudo apt install mpich -y
+sudo apt-get install libopenmpi-dev -y
+
+
+#   NIS +++++++++++++++++++++++++++++++++++++++
+echo sudo apt-get install rpcbind nis -y
+sudo apt-get install rpcbind nis -y
+
+echo "DONE"
+

s3.munge.sh

@@ -0,0 +1,29 @@
+#!/bin/bash
+
+# for SERVER only
+echo sudo rm -rf /etc/munge/munge.key
+sudo rm -rf /etc/munge/munge.key
+echo sudo  create-munge-key -f -r 
+sudo  create-munge-key -f -r
+
+echo ""
+echo "copy munge to home folder"
+echo "sudo cp  /etc/munge/munge.key ~/config/files/munge.key"
+sudo cp  /etc/munge/munge.key ~/config/files/munge.key
+echo sudo chown laoban: ~/config/files/munge.key
+sudo chown laoban: ~/config/files/munge.key
+
+echo ""
+echo "change owner"
+echo "sudo chown munge:munge /etc/munge/munge.key"
+sudo chown munge:munge /etc/munge/munge.key
+
+
+echo ""
+echo "start munge"
+echo "sudo /etc/init.d/munge start"
+sudo /etc/init.d/munge start
+echo ""
+echo "===check status==="
+echo "systemctl status munge"
+systemctl status munge

s4.config.sh

@@ -0,0 +1,45 @@
+#!/bin/bash
+# for SERVER only
+
+echo ""
+echo "sudo cp files/slurm.conf /etc/slurm-lln/slurm.conf"
+sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+
+echo ""
+echo "sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf"
+sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+
+
+echo ""
+echo "make folders"
+sudo mkdir /var/slurm
+sudo mkdir /var/slurm/slurmctld
+sudo mkdir /var/slurm/run
+sudo chown -R slurm:  /var/slurm
+ls -g /var/slurm
+
+echo ""
+echo "sudo rm /var/slurm/slurmctld.log"
+#sudo rm /var/slurm/slurmctld.log 
+
+echo ""
+echo "=====start the severice ====="
+echo "sudo systemctl enable slurmctld"
+sudo systemctl enable slurmctld
+echo "sudo service slurmctld start"
+sudo service slurmctld start
+sleep 1
+
+echo ""
+echo "check status"
+echo "systemctl status slurmctld"
+systemctl status slurmctld
+
+echo ""
+echo "sudo cat /var/slurm/slurmctld.log"
+sudo cat /var/slurm/slurmctld.log
+
+
+
+echo "DONE"
+

s5.check.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+# for xnode only
+echo  for SERVER only
+
+echo ls /var/slurm
+ls /var/slurm
+echo sudo tail  /var/slurm/slurmctld.log
+sudo tail  /var/slurm/slurmctld.log
+
+
+echo ""
+echo "systemctl status slurmctld"
+systemctl status slurmctld
+
+
+echo ""
+echo "sinfo"
+sinfo
+
+echo ""
+echo ""
+echo "---test---"
+srun -N 2 hostname
+

screenMSG.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+sudo rm -rf /etc/update-motd.d/00-header
+sudo rm -rf /etc/update-motd.d/10-help-text
+sudo rm -rf /etc/update-motd.d/50-motd-news
+sudo rm -rf /etc/update-motd.d/85-fwupd
+sudo rm -rf /etc/update-motd.d/88-esm-announce
+sudo rm -rf /etc/update-motd.d/90-updates-available
+sudo rm -rf /etc/update-motd.d/91-contract-ua-esm-status
+sudo rm -rf /etc/update-motd.d/91-release-upgrade
+sudo rm -rf /etc/update-motd.d/92-unattended-upgrades
+sudo rm -rf /etc/update-motd.d/95-hwe-eol
+sudo rm -rf /etc/update-motd.d/97-overlayroot
+sudo rm -rf /etc/update-motd.d/98-fsck-at-reboot
+sudo rm -rf /etc/update-motd.d/98-reboot-required
+
+
+echo "This is $HOSTNAME" > /etc/motd

slurmoff.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+echo sudo systemctl stop slurmctld
+sudo systemctl stop slurmctld
+echo sudo systemctl stop slurmd
+sudo systemctl stop slurmd
+
+
+echo sudo systemctl status slurmctld
+sudo systemctl status slurmctld
+
+

slurmon.sh

@@ -0,0 +1,6 @@
+#!/bin/bash
+
+echo sudo systemctl start slurmctld
+sudo systemctl start slurmctld
+echo sudo systemctl status slurmctld
+sudo systemctl status slurmctld

ss.install.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+sudo apt-get update
+echo "set time zone"
+echo "sudo timedatectl set-timezone Asia/Shanghai"
+sudo timedatectl set-timezone Asia/Shanghai
+
+echo ""
+echo "sudo apt install munge slurm-wlm nis nfs-common -y"
+sudo apt install munge slurm-wlm nis nfs-common -y
+
+
+echo ""
+echo "Install gcc etc."
+echo "sudo apt install gcc g++ gfortran openmpi-bin   libomp-dev -y"
+sudo apt install gcc g++ gfortran openmpi-bin   libomp-dev -y
+
+echo "DONE"
+

ss.nfs.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+echo sudo cp ~/config/files/exports /etc/exports
+sudo cp ~/config/files/exports /etc/exports
+
+echo sudo exportfs -a
+sudo exportfs 
+echo "done"
+
+

ss.slurm.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+
+echo apt-get install make hwloc libhwloc-dev libmunge-dev libmunge2 munge mariadb-server libmysqlclient-dev -y
+sudo apt-get install make hwloc libhwloc-dev libmunge-dev libmunge2 munge mariadb-server libmysqlclient-dev -y
+
+echo cd slurm-20.08.8
+cd slurm-20.08.8
+
+
+echo ./configure --prefix=/opt/slurm/ --sysconfdir=/opt/slurm/etc
+./configure --prefix=/opt/slurm/ --sysconfdir=/opt/slurm/etc
+echo make -j16
+make -j16
+echo make install
+make install
+
+
+sudo cp -r etc/slurm*.service /etc/systemd/system/
+
+sudo systemctl enable mariadb
+sudosystemctl start mariadb
+sudo systemctl status mariadb
+
+

ss.upslurm.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+
+echo ""
+echo sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+
+echo ""
+echo "sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf"
+sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+
+echo sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+
+echo sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+
+echo sudo systemctl restart slurmctld
+sudo systemctl restart slurmctld
+sleep 3
+echo sudo systemctl status slurmctld
+sudo systemctl status slurmctld

x0.host.sh

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+echo "================old file:================"
+cat /etc/hosts
+echo "================hosts.txt================"
+cat ~/config/files/hosts.txt
+echo ""
+read -r -p "Do you want to append the host.txt? [y/N] " input
+ 
+case $input in
+      [yY][eE][sS]|[yY])
+        echo "You say Yes"
+	echo "================do job ...================"
+	cat ~/config/files/hosts.txt | sudo tee -a /etc/hosts
+
+	echo "================new file:"================
+	cat /etc/hosts
+	 ;;
+      [nN][oO]|[nN])
+            echo "You say No"
+            ;;
+      *)
+            echo "skip"
+            exit 1
+            ;;
+esac
+
+
+
+

x1.slurmd.sh

@@ -0,0 +1,47 @@
+#!/bin/bash
+echo "set time zone"
+echo "sudo timedatectl set-timezone Asia/Shanghai"
+sudo timedatectl set-timezone Asia/Shanghai
+
+
+echo ""
+echo "make folders"
+sudo rm -rf /var/slurm
+sudo mkdir /var/slurm
+sudo touch /var/slurm/slurmd.log
+sudo mkdir /var/slurm/slurmd
+sudo mkdir /var/slurm/run
+sudo mkdir /run/slurm
+sudo mkdir /etc/slurm-llnl/
+
+sudo chown -R slurm:  /var/slurm
+sudo chown -R slurm:  /run/slurm
+ls -g /var/slurm
+
+echo ""
+echo "sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf"
+sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+
+echo ""
+echo "sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf"
+sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+
+echo ""
+echo "=====start the severice ====="
+echo sudo systemctl stop slurmd

+sudo systemctl stop slurmd
+echo sudo systemctl start slurmd

+sudo systemctl start slurmd
+
+echo ""
+echo "check status"
+echo "systemctl status slurmd"
+systemctl status slurmd
+
+echo ""
+echo "sudo cat /var/slurm/slurmd.log"
+sudo cat /var/slurm/slurmd.log
+
+
+echo "DONE"
+

x2.munge.sh

@@ -0,0 +1,34 @@
+#!/bin/bash
+echo "sudo mkdir /etc/munge/"
+sudo mkdir /etc/munge/
+echo ""
+echo "copy munge"
+echo sudo cp ~/config/files/munge.key /etc/munge/munge.key
+sudo cp ~/config/files/munge.key /etc/munge/munge.key
+
+
+echo ""
+echo "change owner"
+echo "sudo chown munge:munge /etc/munge/munge.key"
+sudo chown munge:munge /etc/munge/munge.key
+echo sudo chmod 600 /etc/munge/munge.key
+sudo chmod 600 /etc/munge/munge.key
+
+
+echo ""
+echo "start munge"
+echo "sudo /etc/init.d/munge start"
+sudo /etc/init.d/munge start
+
+
+sudo systemctl restart munge
+sleep 2
+echo ""
+echo "===check status==="
+echo "systemctl status munge"
+sudo systemctl status munge
+
+echo "munge -n | ssh laoban@xnode unmunge"
+munge -n | ssh laoban@xnode unmunge
+
+echo "DONE"

x3.check.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+# for comput node only
+echo  for comput node only
+
+echo ""
+echo "systemctl status slurmd"
+systemctl status slurmd
+
+echo ls /var/slurm
+ls /var/slurm
+echo sudo tail  /var/slurm/slurmd.log
+sudo tail  /var/slurm/slurmd.log

xx.install.sh

@@ -0,0 +1,38 @@
+#!/bin/bash
+echo "set time zone"
+echo "sudo timedatectl set-timezone Asia/Shanghai"
+sudo timedatectl set-timezone Asia/Shanghai
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo sudo apt update
+sudo apt update
+sudo apt install debconf-utils  -y
+#  +++++++++++++++++++++++++++++++++++++++
+echo ""
+echo sudo apt install munge nfs-common nis gdal-bin libgdal-dev mailutils -y
+sudo apt install munge slurmd nfs-common nis gdal-bin libgdal-dev mailutils -y
+
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo sudo apt install iperf3 -y
+sudo apt install iperf3 -y
+
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo ""
+echo "Install gcc etc."
+#echo "sudo apt install gcc g++ gfortran openmpi-bin   libomp-dev -y"
+#sudo apt install gcc g++ gfortran openmpi-bin cmake libomp-dev -y
+
+#  +++++++++++++++++++++++++++++++++++++++
+echo ""
+sudo apt install mpich -y
+sudo apt-get install libopenmpi-dev  libomp-dev -y
+
+
+#   NIS +++++++++++++++++++++++++++++++++++++++
+echo sudo apt-get install rpcbind nis -y
+sudo apt-get install rpcbind nis -y
+
+echo "DONE"
+

xx.mount.sh

@@ -0,0 +1,57 @@
+#!/bin/bas
+:q
+
+
+echo "sudo mkdir -p /data /users /scratch"
+echo "sudo chmod -R 750  /users /scratch"
+sudo mkdir -p /data /users /scratch
+sudo chmod -R 750  /users /scratch
+
+echo "================old /etc/fstab:================"
+echo "sudo cat /etc/fstab"
+sudo cat /etc/fstab
+echo "================hosts.txt================"
+echo "cat ~/config/files/fstab.txt"
+cat ~/config/files/fstab.cn.txt
+echo ""
+read -r -p "Do you want to append the file? [y/N] " input
+ 
+case $input in
+      [yY][eE][sS]|[yY])
+        echo "You say Yes"
+	echo "================do job ...================"
+	cat ~/config/files/fstab.cn.txt | sudo tee -a /etc/fstab
+
+	echo "================new file:"================
+	sudo cat /etc/fstab
+	 ;;
+      [nN][oO]|[nN])
+            echo "You say No"
+            ;;
+      *)
+            echo "skip"
+            exit 1
+            ;;
+esac
+
+
+echo " module "
+echo " module "
+echo " module "
+echo cp ~/config/files/nodeenv.sh /etc/profile.d/
+sudo cp ~/config/files/nodeenv.sh /etc/profile.d/
+export PATH="$PATH:/opt/R/bin/"
+export PATH="$PATH:/opt/bin/"
+export PATH="$PATH:/opt/Modules/bin"
+
+echo sudo cp /opt/Modules/init/profile.sh /etc/profile.d
+sudo cp /opt/Modules/init/profile.sh /etc/profile.d
+
+echo sudo mount -a
+sudo mount -a
+
+echo df -hT
+df -hT
+
+
+

xx.slurm.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+echo sudo apt remove -y slurmd slurmctld slurmdbd slurm-client slurm-wlm-*
+sudo apt remove -y slurmd slurmctld slurmdbd slurm-client slurm-wlm-*
+
+
+echo sudo apt autoremove -y
+sudo apt autoremove -y
+
+echo sudo apt-get install make hwloc libhwloc-dev libmunge-dev libmunge2 munge  -y
+sudo apt-get install make hwloc libhwloc-dev libmunge-dev libmunge2 munge  -y
+
+
+sudo rm /etc/systemd/system/slurmd.service
+sudo rm /etc/systemd/system/slurmdbd.service
+sudo rm /etc/systemd/system/slurmctld.service
+
+echo sudo cp -r ~/config/files/slurm*.service /etc/systemd/system/
+sudo cp -r ~/config/files/slurm*.service /etc/systemd/system/
+
+
+echo sudo chown root: /etc/systemd/system/slurm*.service
+sudo chown root: /etc/systemd/system/slurm*.service
+
+
+echo sudo chmod 600 /etc/systemd/system/slurm*.service
+sudo chmod 600 /etc/systemd/system/slurm*.service
+
+
+cat ~/config/files/bash.txt | sudo tee -a  /etc/bash.bashrc
+export PATH=$PATH:/opt/slurm//bin:/opt/slurm//sbin 
+
+sudo systemctl enable slurmd
+sudo systemctl start slurmd 
+sudo systemctl status slurmd
+
+
+

xx.upslurm.sh

@@ -0,0 +1,22 @@
+#!/bin/bash
+
+echo ""
+echo sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+
+echo ""
+echo "sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf"
+sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+
+echo sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+sudo cp ~/config/files/slurm.conf /etc/slurm-llnl/slurm.conf
+
+echo sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+sudo chown slurm:slurm  /etc/slurm-llnl/slurm.conf
+
+echo sudo systemctl restart slurmd
+sudo systemctl restart slurmd
+sleep 3
+
+echo sudo systemctl status slurmd
+sudo systemctl status slurmd