126 lines
4.0 KiB
Docker
126 lines
4.0 KiB
Docker
FROM ubuntu:22.04
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## CLM5.0
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MAINTAINER "SHUD"
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WORKDIR /model
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ENV DEBIAN_FRONTEND=noninteractive
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ENV VERSION_CODENAME=jammy
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RUN rm /etc/apt/sources.list \
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&& echo "deb [trusted=yes] https://mirrors.tuna.tsinghua.edu.cn/ubuntu/ ${VERSION_CODENAME} main restricted universe multiverse" >> /etc/apt/sources.list \
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&& echo "deb [trusted=yes] https://mirrors.tuna.tsinghua.edu.cn/ubuntu/ ${VERSION_CODENAME}-updates main restricted universe multiverse" >> /etc/apt/sources.list \
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&& echo "deb [trusted=yes] https://mirrors.tuna.tsinghua.edu.cn/ubuntu/ ${VERSION_CODENAME}-backports main restricted universe multiverse" >> /etc/apt/sources.list \
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&& echo "deb [trusted=yes] https://mirrors.tuna.tsinghua.edu.cn/ubuntu/ ${VERSION_CODENAME}-security main restricted universe multiverse" >> /etc/apt/sources.list \
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&& echo 'Acquire::https { Verify-Peer "false"; Verify-Host "false"; }' >> /etc/apt/apt.conf.d/tuna.conf
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# && echo "deb https://cloud.r-project.org/bin/linux/ubuntu cosmic-cran35/" >> /etc/apt/sources.list
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RUN apt-get update \
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&& apt install -y --no-install-recommends --assume-yes \
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ca-certificates \
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dejagnu \
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sudo libtool \
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vim git git-lfs subversion gfortran cmake \
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libxml2-utils libxml-libxml-perl \
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python3 python3-dev python3-venv python3-pip \
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make m4 \
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libcurl4-openssl-dev liblapack-dev libblas-dev mpich libmpich-dev \
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gnupg wget curl \
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&& apt-get clean
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RUN python3 -m venv /venv
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ENV PATH="/venv/bin:${PATH}"
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ADD pkgs/*.gz /usr/local/src/
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ARG ZDIR=/usr/local/zlib
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RUN cd /usr/local/src/zlib-1.2.11 \
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&& CC=mpicc ./configure --prefix=${ZDIR} \
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&& make \
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# && make check \
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&& make install \
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&& rm -rf /usr/local/src/zlib-1.2.11
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ENV CC=mpicc \
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CXX=mpicxx \
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FC=mpif90 \
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F77=mpif90
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ARG PNDIR=/usr/local/pnetcdf
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RUN cd /usr/local/src/pnetcdf-1.11.0 \
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&& FC=mpif90 MPICC=mpicc CFLAGS="-fPIC -g -O2" \
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./configure --prefix=${PNDIR} --enable-shared --enable-profiling\
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&& make \
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# && make tests \
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# && make check \
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# && make ptests \
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&& make install \
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&& rm -rf /usr/local/src/pnetcdf-1.11.0
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# Parallel OpenMPI-HDF5-NetCDF stack
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# https://gist.github.com/milancurcic/3a6c1a97a99d291f88cc61dae6621bdf
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ARG H5DIR=/usr/local/hdf5
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RUN cd /usr/local/src/hdf5-1.10.4 \
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&& CC=mpicc FC=mpif90 CFLAGS="-fPIC -w" ./configure --prefix=${H5DIR} \
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--with-zlib=${ZDIR} --enable-parallel --enable-hl \
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&& make \
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# && make check \
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&& make install \
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&& rm -rf /usr/local/src/hdf5-1.10.4
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#--enable-shared --enable-fortran
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ARG NCDIR=/usr/local/netcdf4
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RUN cd /usr/local/src/netcdf-c-4.6.2 \
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&& CC=mpicc CPPFLAGS="-I${PNDIR}/include -I${H5DIR}/include -I${ZDIR}/include" \
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LDFLAGS="-L${PNDIR}/lib -L${H5DIR}/lib -L${ZDIR}/lib" \
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./configure --prefix=${NCDIR} --enable-parallel-tests \
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&& make \
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# && make check \
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&& make install \
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&& rm -rf /usr/local/src/netcdf-c-4.6.2
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ARG NFDIR=/usr/local/netcdff4
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RUN cd /usr/local/src/netcdf-fortran-4.4.5 \
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&& CPPFLAGS=-I${NCDIR}/include LDFLAGS=-L${NCDIR}/lib \
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./configure --prefix=${NFDIR} \
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&& make \
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# && make check \
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&& make install \
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&& rm -rf /usr/local/src/netcdf-fortran-4.4.5
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RUN echo ${NCDIR}/lib > /etc/ld.so.conf.d/netcdf.conf \
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&& echo ${NFDIR}/lib >> /etc/ld.so.conf.d/netcdf.conf \
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&& echo ${ZDIR}/lib >> /etc/ld.so.conf.d/netcdf.conf \
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&& echo ${H5DIR}/lib >> /etc/ld.so.conf.d/netcdf.conf \
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&& echo ${PNDIR}/lib >> /etc/ld.so.conf.d/netcdf.conf \
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&& ldconfig
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ENV USER=clm
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RUN useradd -m -G adm,sudo -s /bin/bash $USER \
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&& echo "root:root" | chpasswd \
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&& echo "clm:clm" | chpasswd
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RUN git clone -b release-clm5.0 https://github.com/ESCOMP/CTSM.git ctsm \
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&& cd ctsm && ./manage_externals/checkout_externals \
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&& chown -R clm:clm /model/ctsm \
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&& cd ..
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VOLUME ["/inputdata"]
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ENV PATH="/model/ctsm/cime/scripts:${NCDIR}/bin:${PATH}" \
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LANG=C.UTF-8
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COPY config/*.xml /home/${USER}/.cime/
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COPY config /home/${USER}/cesm/config
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COPY run_CLM50_example01.sh /home/${USER}/cesm/
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WORKDIR /home/${USER}/cesm
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RUN chown -R clm:clm /home /home/${USER} /home/${USER}/.cime \
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&& chmod 755 -R /inputdata /home/${USER}/.cime /home/${USER}
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USER ${USER}
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CMD bash
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