first commit
This commit is contained in:
commit
0dde616cfb
35
.config_files.xml
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35
.config_files.xml
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|
<?xml version="1.0"?>
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||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" ?>
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||||||
|
|
||||||
|
<entry_id>
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||||||
|
|
||||||
|
<!-- This is the same as the default entry in
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||||||
|
cime/config/cesm/config_files.xml except for the value for CLM:
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||||||
|
In a standalone CLM checkout, COMP_ROOT_DIR_LND is $SRCROOT
|
||||||
|
rather than $SRCROOT/components/clm.
|
||||||
|
|
||||||
|
However, because of the way overrides are handled, we need to
|
||||||
|
re-specify the full information here rather than just overriding
|
||||||
|
the value for CLM.
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||||||
|
-->
|
||||||
|
<entry id="COMP_ROOT_DIR_LND">
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||||||
|
<type>char</type>
|
||||||
|
<default_value>unset</default_value>
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||||||
|
<values>
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||||||
|
<value component="clm" >$SRCROOT</value>
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||||||
|
<value component="slim" >$SRCROOT/components/slim/</value>
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||||||
|
<value component="dlnd" comp_interface="mct" >$SRCROOT/components/cpl7/components/data_comps_$COMP_INTERFACE/dlnd</value>
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||||||
|
<value component="dlnd" comp_interface="nuopc" >$SRCROOT/components/cdeps/dlnd</value>
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||||||
|
<value component="slnd" comp_interface="mct" >$SRCROOT/components/cpl7/components/stub_comps_$COMP_INTERFACE/slnd</value>
|
||||||
|
<value component="slnd" comp_interface="nuopc" >$CIMEROOT/CIME/non_py/src/components/stub_comps_$COMP_INTERFACE/slnd</value>
|
||||||
|
<value component="xlnd" comp_interface="mct" >$SRCROOT/components/cpl7/components/xcpl_comps_$COMP_INTERFACE/xlnd</value>
|
||||||
|
<value component="xlnd" comp_interface="nuopc" >$CIMEROOT/CIME/non_py/src/components/xcpl_comps_$COMP_INTERFACE/xlnd</value>
|
||||||
|
</values>
|
||||||
|
<group>case_comps</group>
|
||||||
|
<file>env_case.xml</file>
|
||||||
|
<desc>Root directory of the case land model component </desc>
|
||||||
|
<schema>$CIMEROOT/CIME/data/config/xml_schemas/config_compsets.xsd</schema>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
</entry_id>
|
||||||
7
.lfsconfig
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7
.lfsconfig
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|
|||||||
|
[lfs]
|
||||||
|
# We auto-fetch any netCDF files, because they are needed for
|
||||||
|
# running tests; however, we do NOT auto-fetch other binary
|
||||||
|
# files, in particular image files that are part of the
|
||||||
|
# documentation source (these are fetched as part of the
|
||||||
|
# documentation build process).
|
||||||
|
fetchinclude = *.nc
|
||||||
7
.zenodo.json
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7
.zenodo.json
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|
|||||||
|
{
|
||||||
|
"creators": [
|
||||||
|
{
|
||||||
|
"name": "CTSM Development Team"
|
||||||
|
}
|
||||||
|
]
|
||||||
|
}
|
||||||
107
CODE_OF_CONDUCT.md
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107
CODE_OF_CONDUCT.md
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|
|||||||
|
# Contributor Code of Conduct
|
||||||
|
_The Contributor Code of Conduct is for participants in our software projects and community._
|
||||||
|
|
||||||
|
## Our Pledge
|
||||||
|
We, as contributors, creators, stewards, and maintainers (participants), of **Community Terrestrial Systems Model (CTSM)** pledge to make participation in
|
||||||
|
our software, system or hardware project and community a safe, productive, welcoming and inclusive experience for everyone.
|
||||||
|
All participants are required to abide by this Code of Conduct.
|
||||||
|
This includes respectful treatment of everyone regardless of age, body size, disability, ethnicity, gender identity or expression,
|
||||||
|
level of experience, nationality, political affiliation, veteran status, pregnancy, genetic information, physical appearance, race,
|
||||||
|
religion, or sexual orientation, as well as any other characteristic protected under applicable US federal or state law.
|
||||||
|
|
||||||
|
## Our Standards
|
||||||
|
Examples of behaviors that contribute to a positive environment include:
|
||||||
|
|
||||||
|
* All participants are treated with respect and consideration, valuing a diversity of views and opinions
|
||||||
|
* Be considerate, respectful, and collaborative
|
||||||
|
* Communicate openly with respect for others, critiquing ideas rather than individuals and gracefully accepting criticism
|
||||||
|
* Acknowledging the contributions of others
|
||||||
|
* Avoid personal attacks directed toward other participants
|
||||||
|
* Be mindful of your surroundings and of your fellow participants
|
||||||
|
* Alert UCAR staff and suppliers/vendors if you notice a dangerous situation or someone in distress
|
||||||
|
* Respect the rules and policies of the project and venue
|
||||||
|
|
||||||
|
Examples of unacceptable behavior include, but are not limited to:
|
||||||
|
|
||||||
|
* Harassment, intimidation, or discrimination in any form
|
||||||
|
* Physical, verbal, or written abuse by anyone to anyone, including repeated use of pronouns other than those requested
|
||||||
|
* Unwelcome sexual attention or advances
|
||||||
|
* Personal attacks directed at other guests, members, participants, etc.
|
||||||
|
* Publishing others' private information, such as a physical or electronic address, without explicit permission
|
||||||
|
* Alarming, intimidating, threatening, or hostile comments or conduct
|
||||||
|
* Inappropriate use of nudity and/or sexual images
|
||||||
|
* Threatening or stalking anyone, including a participant
|
||||||
|
* Other conduct which could reasonably be considered inappropriate in a professional setting
|
||||||
|
|
||||||
|
## Scope
|
||||||
|
This Code of Conduct applies to all spaces managed by the Project whether they be physical, online or face-to-face.
|
||||||
|
This includes project code, code repository, associated web pages, documentation, mailing lists, project websites and wiki pages,
|
||||||
|
issue tracker, meetings, telecons, events, project social media accounts, and any other forums created by the project team which the
|
||||||
|
community uses for communication.
|
||||||
|
In addition, violations of this Code of Conduct outside these spaces may affect a person's ability to participate within them.
|
||||||
|
Representation of a project may be further defined and clarified by project maintainers.
|
||||||
|
|
||||||
|
## Community Responsibilities
|
||||||
|
Everyone in the community is empowered to respond to people who are showing unacceptable behavior.
|
||||||
|
They can talk to them privately or publicly.
|
||||||
|
Anyone requested to stop unacceptable behavior is expected to comply immediately.
|
||||||
|
If the behavior continues concerns may be brought to the project administrators or to any other party listed in the
|
||||||
|
[Reporting](#reporting) section below.
|
||||||
|
|
||||||
|
## Project Administrator Responsibilities
|
||||||
|
Project administrators are responsible for clarifying the standards of acceptable behavior and are encouraged to model appropriate
|
||||||
|
behavior and provide support when people in the community point out inappropriate behavior.
|
||||||
|
Project administrator(s) are normally the ones that would be tasked to carry out the actions in the [Consequences](#consequences)
|
||||||
|
section below.
|
||||||
|
|
||||||
|
Project administrators are also expected to keep this Code of Conduct updated with the main one housed at UCAR, as listed below in
|
||||||
|
the [Attribution](#attribution) section.
|
||||||
|
|
||||||
|
## Reporting
|
||||||
|
Instances of unacceptable behavior can be brought to the attention of the project administrator(s) who may take any action as
|
||||||
|
outlined in the [Consequences](#consequences) section below.
|
||||||
|
However, making a report to a project administrator is not considered an 'official report' to UCAR.
|
||||||
|
|
||||||
|
Instances of unacceptable behavior may also be reported directly to UCAR pursuant to [UCAR's Harassment Reporting and Complaint
|
||||||
|
Procedure](https://www2.fin.ucar.edu/procedures/hr/harassment-reporting-and-complaint-procedure), or anonymously through [UCAR's
|
||||||
|
EthicsPoint Hotline](https://www2.fin.ucar.edu/ethics/anonymous-reporting).
|
||||||
|
|
||||||
|
Complaints received by UCAR will be handled pursuant to the procedures outlined in UCAR's Harassment Reporting and Complaint
|
||||||
|
Procedure.
|
||||||
|
Complaints to UCAR will be held as confidential as practicable under the circumstances, and retaliation against a person who
|
||||||
|
initiates a complaint or an inquiry about inappropriate behavior will not be tolerated.
|
||||||
|
|
||||||
|
Any Contributor can use these reporting methods even if they are not directly affiliated with UCAR.
|
||||||
|
The Frequently Asked Questions (FAQ) page for reporting is [here](https://www2.fin.ucar.edu/procedures/hr/reporting-faqs).
|
||||||
|
|
||||||
|
## Consequences
|
||||||
|
Upon receipt of a complaint, the project administrator(s) may take any action deemed necessary and appropriate under the
|
||||||
|
circumstances.
|
||||||
|
Such action can include things such as: removing, editing, or rejecting comments, commits, code, wiki edits, email, issues, and
|
||||||
|
other contributions that are not aligned to this Code of Conduct, or banning temporarily or permanently any contributor for other
|
||||||
|
behaviors that are deemed inappropriate, threatening, offensive, or harmful.
|
||||||
|
Project administrators also have the right to report violations to UCAR HR and/or UCAR's Office of Diversity, Equity and Inclusion
|
||||||
|
(ODEI), as well as a participant's home institution and/or law enforcement.
|
||||||
|
In the event an incident is reported to UCAR, UCAR will follow its Harassment Reporting and Complaint Procedure.
|
||||||
|
|
||||||
|
## Process for Changes
|
||||||
|
All UCAR managed projects are required to adopt this Contributor Code of Conduct.
|
||||||
|
Adoption is assumed even if not expressly stated in the repository.
|
||||||
|
Projects should fill in sections where prompted with project-specific information, including, project name and adoption date.
|
||||||
|
|
||||||
|
Projects that adopt this Code of Conduct need to stay up to date with UCAR's Contributor Code of Conduct, linked with a DOI in the
|
||||||
|
[Attribution](#attribution) section below.
|
||||||
|
Projects can make limited substantive changes to the Code of Conduct, however, the changes must be limited in scope and may not
|
||||||
|
contradict the UCAR Contributor Code of Conduct.
|
||||||
|
|
||||||
|
## Attribution
|
||||||
|
This Code of Conduct was originally adapted from the [Contributor Covenant](http://contributor-covenant.org/version/1/4), version
|
||||||
|
1.4.
|
||||||
|
We then aligned it with the UCAR Participant Code of Conduct, which also borrows from the American Geophysical Union (AGU) Code of
|
||||||
|
Conduct.
|
||||||
|
The UCAR Participant Code of Conduct applies to both UCAR employees as well as participants in activities run by UCAR.
|
||||||
|
The original version of this for all software projects that have strong management from UCAR or UCAR staff is available on the UCAR
|
||||||
|
website at https://doi.org/10.5065/6w2c-a132.
|
||||||
|
The date that it was adopted by this project was **Feb/13/2018**.
|
||||||
|
When responding to complaints, UCAR HR and ODEI will do so based on the latest published version.
|
||||||
|
Therefore, any project-specific changes should follow the [Process for Changes](#process-for-changes) section above.
|
||||||
48
CONTRIBUTING.md
Normal file
48
CONTRIBUTING.md
Normal file
@ -0,0 +1,48 @@
|
|||||||
|
## How to contribute:
|
||||||
|
|
||||||
|
We recommend that you first open an issue (https://github.com/escomp/ctsm/issues/) to
|
||||||
|
discuss the changes or additions that you propose. Through the issue discussion, you can
|
||||||
|
work with other CTSM developers to think about the design and implementation of the changes
|
||||||
|
as well as the planning and scheduling for the change to come into CTSM. An alternative is
|
||||||
|
to contact the key software and science developers via ctsm-software@ucar.edu. Making
|
||||||
|
contact early in your project will increase the likelihood that your developments can come
|
||||||
|
into CTSM.
|
||||||
|
|
||||||
|
We also recommend that you join the ctsm-dev@ucar.edu google groups in order
|
||||||
|
to be informed about the science that is happening in CTSM as well as the latest developments and tags.
|
||||||
|
The ctsm-dev group is here:
|
||||||
|
|
||||||
|
https://groups.google.com/a/ucar.edu/forum/#!forum/ctsm-dev
|
||||||
|
|
||||||
|
Use the help from the wiki below to setup a fork and personal branch in GitHub to put your developments
|
||||||
|
on and keep up to date with the master branch of CTSM. Once the changes are sufficiently advanced you
|
||||||
|
can form a Pull Request on GitHub. Either from your fork on GitHub, or from the main ESCOMP GitHub page
|
||||||
|
for CTSM (be sure to hit the "compare across forks" link at the top of the page when you first create
|
||||||
|
the pull request).
|
||||||
|
|
||||||
|
https://github.com/ESCOMP/ctsm/pulls
|
||||||
|
|
||||||
|
This allows you to show your proposed changes and start getting feedback on them (even if they aren't finished).
|
||||||
|
This also allows your changes to be planned for and slated for a time to come into CTSM master. In most
|
||||||
|
cases you won't merge the Pull Request yourself, but a software engineer responsible for CTSM will do
|
||||||
|
additional testing and bring the changes to CTSM master.
|
||||||
|
|
||||||
|
### CTSM Developers Guide:
|
||||||
|
|
||||||
|
https://wiki.ucar.edu/display/ccsm/Community+Land+Model+Developers+Guide
|
||||||
|
|
||||||
|
## Getting Started:
|
||||||
|
|
||||||
|
The following resources give you information on the project and how to get started.
|
||||||
|
|
||||||
|
#### CTSM Wiki:
|
||||||
|
|
||||||
|
https://github.com/ESCOMP/ctsm/wiki
|
||||||
|
|
||||||
|
#### Coding Practices and Style:
|
||||||
|
|
||||||
|
Code conventions: https://github.com/ESCOMP/ctsm/wiki/CTSM-coding-guidelines
|
||||||
|
|
||||||
|
#### Code of Conduct:
|
||||||
|
|
||||||
|
See the `CODE_OF_CONDUCT.md` file for expectations of how to work in the community.
|
||||||
101
Externals.cfg
Normal file
101
Externals.cfg
Normal file
@ -0,0 +1,101 @@
|
|||||||
|
[clm]
|
||||||
|
local_path = .
|
||||||
|
protocol = externals_only
|
||||||
|
externals = Externals_CLM.cfg
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[cism]
|
||||||
|
local_path = components/cism
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/CISM-wrapper
|
||||||
|
tag = cismwrap_2_1_99
|
||||||
|
externals = Externals_CISM.cfg
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[rtm]
|
||||||
|
local_path = components/rtm
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/RTM
|
||||||
|
tag = rtm1_0_79
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[mosart]
|
||||||
|
local_path = components/mosart
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/MOSART
|
||||||
|
tag = mosart1_0_49
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[mizuRoute]
|
||||||
|
local_path = components/mizuRoute
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/nmizukami/mizuRoute
|
||||||
|
hash = 34723c2
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[ccs_config]
|
||||||
|
tag = ccs_config_cesm0.0.92
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESMCI/ccs_config_cesm.git
|
||||||
|
local_path = ccs_config
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[cime]
|
||||||
|
local_path = cime
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESMCI/cime
|
||||||
|
tag = cime6.0.217_httpsbranch03
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[cmeps]
|
||||||
|
tag = cmeps0.14.50
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/CMEPS.git
|
||||||
|
local_path = components/cmeps
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[cdeps]
|
||||||
|
tag = cdeps1.0.28
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/CDEPS.git
|
||||||
|
local_path = components/cdeps
|
||||||
|
externals = Externals_CDEPS.cfg
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[cpl7]
|
||||||
|
tag = cpl77.0.7
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/CESM_CPL7andDataComps
|
||||||
|
local_path = components/cpl7
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[share]
|
||||||
|
tag = share1.0.18
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESCOMP/CESM_share
|
||||||
|
local_path = share
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[mct]
|
||||||
|
tag = MCT_2.11.0
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/MCSclimate/MCT
|
||||||
|
local_path = libraries/mct
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[parallelio]
|
||||||
|
tag = pio2_6_2
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/NCAR/ParallelIO
|
||||||
|
local_path = libraries/parallelio
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[doc-builder]
|
||||||
|
local_path = doc/doc-builder
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/ESMCI/doc-builder
|
||||||
|
tag = v1.0.8
|
||||||
|
required = False
|
||||||
|
|
||||||
|
[externals_description]
|
||||||
|
schema_version = 1.0.0
|
||||||
9
Externals_CLM.cfg
Normal file
9
Externals_CLM.cfg
Normal file
@ -0,0 +1,9 @@
|
|||||||
|
[fates]
|
||||||
|
local_path = src/fates
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/NGEET/fates
|
||||||
|
tag = sci.1.73.0_api.35.0.0
|
||||||
|
required = True
|
||||||
|
|
||||||
|
[externals_description]
|
||||||
|
schema_version = 1.0.0
|
||||||
34
LICENSE
Normal file
34
LICENSE
Normal file
@ -0,0 +1,34 @@
|
|||||||
|
Copyright (c) 2005-2018, University Corporation for Atmospheric Research (UCAR)
|
||||||
|
All rights reserved.
|
||||||
|
|
||||||
|
Developed by:
|
||||||
|
University Corporation for Atmospheric Research - National Center for Atmospheric Research
|
||||||
|
https://www2.cesm.ucar.edu/working-groups/sewg
|
||||||
|
|
||||||
|
Permission is hereby granted, free of charge, to any person obtaining
|
||||||
|
a copy of this software and associated documentation files (the "Software"),
|
||||||
|
to deal with the Software without restriction, including without limitation
|
||||||
|
the rights to use, copy, modify, merge, publish, distribute, sublicense,
|
||||||
|
and/or sell copies of the Software, and to permit persons to whom
|
||||||
|
the Software is furnished to do so, subject to the following conditions:
|
||||||
|
|
||||||
|
- Redistributions of source code must retain the above copyright notice,
|
||||||
|
this list of conditions and the following disclaimers.
|
||||||
|
- Redistributions in binary form must reproduce the above copyright notice,
|
||||||
|
this list of conditions and the following disclaimers in the documentation
|
||||||
|
and/or other materials provided with the distribution.
|
||||||
|
- Neither the names of [Name of Development Group, UCAR],
|
||||||
|
nor the names of its contributors may be used to endorse or promote
|
||||||
|
products derived from this Software without specific prior written permission.
|
||||||
|
|
||||||
|
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
|
||||||
|
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
|
||||||
|
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
|
||||||
|
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
|
||||||
|
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
|
||||||
|
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
|
||||||
|
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
|
||||||
|
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
|
||||||
|
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
|
||||||
|
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
|
||||||
|
POSSIBILITY OF SUCH DAMAGE.
|
||||||
185
README
Normal file
185
README
Normal file
@ -0,0 +1,185 @@
|
|||||||
|
$CTSMROOT/README 04/19/2023
|
||||||
|
|
||||||
|
Community Terrestrial Systems Model (CTSM) science version 5.2 series -- source code, tools,
|
||||||
|
offline-build and test scripts. This gives you everything you need
|
||||||
|
to run CTSM with CESM with the CMEPS driver and CDEPS data models to provide CRU NCEP or GSWP3 forcing data in
|
||||||
|
place of a modeled atmosphere.
|
||||||
|
|
||||||
|
CMEPS is the Community Mediator for Earth Prediction Systems. And CDEPS is the
|
||||||
|
Community Data Models for Earth Prediction System. They are both NUOPC based models
|
||||||
|
used to drive the CESM (Community Earth System Model) of which CTSM is a component of.
|
||||||
|
NUOPC is the National Unified Operational Prediction Capability a standard way of building
|
||||||
|
coupled model systems. The NUOPC layer is based on the Earth System Modeling Framework (ESMF).
|
||||||
|
|
||||||
|
For lists of current bugs (issues) and current development see the CTSM GitHub page:
|
||||||
|
|
||||||
|
https://github.com/ESCOMP/CTSM
|
||||||
|
|
||||||
|
INFORMATION ON THE CMEPS DRIVER:
|
||||||
|
|
||||||
|
https://escomp.github.io/CMEPS
|
||||||
|
|
||||||
|
https://earthsystemmodeling.org/nuopc/
|
||||||
|
|
||||||
|
IMPORTANT NOTE ON CESM CHECKOUT VERSUS A CTSM CHECKOUT:
|
||||||
|
|
||||||
|
If this is the top level directory from making a clone of CTSM the
|
||||||
|
directory structure is a little bit different than if CTSM is from
|
||||||
|
a clone of the entire CESM. If this is part of CESM this directory
|
||||||
|
will be under components/clm alongside other CESM component models.
|
||||||
|
For a CTSM checkout this will be the top level directory.
|
||||||
|
|
||||||
|
Other documentation will refer to $CTSMROOT and it means the directory
|
||||||
|
that this file is at. CIMEROOT is the directory where "cime" is for
|
||||||
|
this checkout. For a CESM checkout $CIMEROOT will be the "cime" directory
|
||||||
|
beneath the top level directory. For a CTSM checkout $CIMEROOT will
|
||||||
|
be $CTSMROOT/cime.
|
||||||
|
|
||||||
|
IMPORTANT NOTE ABOUT (deprecated)
|
||||||
|
|
||||||
|
Anything marked with (deprecated) is something is going to be removed in a future update.
|
||||||
|
Often this means it will be replaced with something else.
|
||||||
|
|
||||||
|
|
||||||
|
General directory structure ($CTSMROOT):
|
||||||
|
|
||||||
|
doc --------------- Documentation of CTSM.
|
||||||
|
bld --------------- build-namelist scripts for CTSM.
|
||||||
|
src --------------- CTSM Source code.
|
||||||
|
lilac ------------- Lightweight Infrastructure for Land-Atmosphere Coupling (for coupling to a host atmosphere model)
|
||||||
|
test -------------- CTSM Testing scripts for CTSM offline tools (deprecated)
|
||||||
|
tools ------------- CTSM Offline tools to prepare input datasets and process output.
|
||||||
|
cime_config ------- Configuration files of cime for compsets and CTSM settings
|
||||||
|
manage_externals -- Script to manage the external source directories (deprecated)
|
||||||
|
py_env_create ----- Script to setup the python environment for CTSM python tools using conda
|
||||||
|
python ------------ Python modules used in tools and testing and automated checking of ALL CTSM python scirpts
|
||||||
|
|
||||||
|
Directory structure only for a CTSM checkout:
|
||||||
|
|
||||||
|
components -------- Other active sub-components needed for CTSM to run (river routing and land-ice models)
|
||||||
|
libraries --------- CESM libraries: MCT (Model Coupling Toolkit) and PIO (deprecated)
|
||||||
|
share ------------- CESM shared code
|
||||||
|
ccs_config -------- CIME configure files (for grids, compsets, and machines) for CESM
|
||||||
|
|
||||||
|
cime/scripts --------------- cesm/cime driver scripts
|
||||||
|
|
||||||
|
components/cmeps -------------------- CESM top level driver (for NUOPC driver [which is the default]) source code.
|
||||||
|
components/cdeps -------------------- CESM top level data model shared code (for NUOPC driver).
|
||||||
|
components/cism --------------------- CESM Community land Ice Sheet Model.
|
||||||
|
components/mosart ------------------- Model for Scale Adaptive River Transport
|
||||||
|
components/rtm ---------------------- CESM River Transport Model.
|
||||||
|
components/cpl7 --------------------- CESM top level driver for MCT driver (deprecated will be removed)
|
||||||
|
|
||||||
|
Top level documentation ($CTSMROOT):
|
||||||
|
|
||||||
|
README ------------------- This file
|
||||||
|
README.md ---------------- File that displays on github under https::/github.com/ESCOMP/CTSM.git
|
||||||
|
README.rst --------------- File that displays under the project in github
|
||||||
|
README_EXTERNALS.rst ----- Information on how to work with manage_externals for CTSM (deprecated)
|
||||||
|
CODE_OF_CONDUCT.md ------- Code of Conduct for how to work with each other on the CTSM project
|
||||||
|
Copyright ---------------- CESM Copyright file
|
||||||
|
doc/UpdateChangeLog.pl --- Script to add documentation on a tag to the
|
||||||
|
ChangeLog/ChangeSum files
|
||||||
|
doc/ChangeLog ------------ Documents different CTSM versions
|
||||||
|
doc/ChangeSum ------------ Summary documentation of different CTSM versions
|
||||||
|
|
||||||
|
doc/design --------------- Software Engineering and code design document files
|
||||||
|
|
||||||
|
Checklists for standard Software Engineering tasks
|
||||||
|
|
||||||
|
./doc/README.CHECKLIST.master_tags
|
||||||
|
./bld/namelist_files/README.CHECKLIST.interpolating_initial_conditions.md
|
||||||
|
|
||||||
|
Documentation of Namelist Items: (view the following in a web browser)
|
||||||
|
|
||||||
|
bld/namelist_files/namelist_definition_ctsm.xml --- Definition of all namelist items
|
||||||
|
bld/namelist_files/namelist_defaults_ctsm.xml ----- Default values
|
||||||
|
|
||||||
|
=============================================================================================
|
||||||
|
Important files in main directories (under $CTSMROOT):
|
||||||
|
=============================================================================================
|
||||||
|
|
||||||
|
Externals.cfg --------------- File for management of the main high level external (deprecated)
|
||||||
|
Externals_CLM.cfg ----------- File for management of the CTSM specific externals (i.e. FATES)
|
||||||
|
|
||||||
|
run_sys_tests --------------- Python script to send the standard CTSM testing off (submits
|
||||||
|
the create_test test suite for several different compilers on the
|
||||||
|
machines we do standard CTSM testing on).
|
||||||
|
|
||||||
|
parse_cime.cs.status -------- Script to parse test status files cs.status.* created by create_test
|
||||||
|
(can be used along with run_sys_tests)
|
||||||
|
doc/Quickstart.GUIDE -------- Quick guide to using NUOPC scripts.
|
||||||
|
doc/IMPORTANT_NOTES --------- Some important notes about this version of
|
||||||
|
CTSM, configuration modes and namelist items
|
||||||
|
that are not validated or functional.
|
||||||
|
doc/ChangeLog --------------- Detailed list of changes for each model version.
|
||||||
|
doc/ChangeSum --------------- Summary one-line list of changes for each
|
||||||
|
model version.
|
||||||
|
doc/UsersGuide -------------- CTSM Users Guide
|
||||||
|
doc/IMPORTANT_NOTES --------- Some important notes on caveats for some configurations/namelist items
|
||||||
|
|
||||||
|
bld/README ------------------ Description of how to use the build-namelist scripts.
|
||||||
|
bld/build-namelist ---------- Script to build CTSM namelists.
|
||||||
|
|
||||||
|
cime_config/buildnml ------------- Build the CTSM namelist for CIME
|
||||||
|
cime_config/buildlib ------------- Build the CTSM library
|
||||||
|
cime_config/config_compsets.xml -- Define CTSM compsets
|
||||||
|
cime_config/config_component.xml - Define CTSM XML settings
|
||||||
|
cime_config/config_tests.xml ----- Define CTSM specific tests
|
||||||
|
cime_config/config_pes.xml ------- Define Processor layouts for various CTSM grids and compsets
|
||||||
|
cime_config/testdefs ------------- Directory for specification of CTSM testing
|
||||||
|
cime_config/testdefs/ExpectedTestFails.xml -- List of tests that are expected to fail
|
||||||
|
cime_config/usermods_dirs -------- Directories of sets of user-modification subdirs
|
||||||
|
(These are directories that add specific user modifications to
|
||||||
|
simulations created using "cime/scripts/create_newcase --user-mods-dir".)
|
||||||
|
|
||||||
|
tools/mksurfdata_esmf --------- Directory to build program to create surface dataset
|
||||||
|
at any resolution.
|
||||||
|
tools/mkprocdata_map ---------- Process history data from unstructed grids to a gridded
|
||||||
|
format.
|
||||||
|
tools/mkmapgrids -------------- NCL script to create a SCRIP grid file for a regular lat/lon grid (deprecated)
|
||||||
|
tools/crop_calendars ---------- Tools to process and process and create crop calendar datasets for CTSM
|
||||||
|
tools/modify_input_files ------ Script to modify existing CTSM input datasets in standard ways
|
||||||
|
tools/site_and_regional ------- Scripts to create input datasets for single site and regional
|
||||||
|
cases, primarily by modifying existing global datasets
|
||||||
|
tools/contrib ----------------- Miscellansous useful scripts for pre and post processing
|
||||||
|
as well as case management of CTSM. These scripts are
|
||||||
|
contributed by users and may not be as well tested or
|
||||||
|
supported as other tools.
|
||||||
|
|
||||||
|
|
||||||
|
=============================================================================================
|
||||||
|
Source code directory structure:
|
||||||
|
=============================================================================================
|
||||||
|
|
||||||
|
src/biogeochem ---- Biogeochemisty
|
||||||
|
src/main ---------- Main control and high level code
|
||||||
|
src/cpl ----------- Land model high level caps for NUOPC driver (and MCT and LILAC)
|
||||||
|
src/biogeophys ---- Biogeophysics (Hydrology)
|
||||||
|
src/dyn_subgrid --- Dynamic land unit change
|
||||||
|
src/init_interp --- Online interpolation
|
||||||
|
scr/fates --------- FATES model and sub-directories
|
||||||
|
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
|
||||||
|
Experimental Ecosystem Demography model
|
||||||
|
src/utils --------- Utility codes
|
||||||
|
src/self_tests ---- Internal testing (unit tests run as a part of a CTSM simulation)
|
||||||
|
src/unit_test_shr - Unit test shared modules for unit testing
|
||||||
|
src/unit_test_stubs Unit test stubs that replicate CTSM code simpler
|
||||||
|
|
||||||
|
=============================================================================================
|
||||||
|
QUICKSTART: using the NUOPC driver scripts
|
||||||
|
=============================================================================================
|
||||||
|
|
||||||
|
cd $CIMEROOT/scripts
|
||||||
|
./create_newcase # get help on how to run create_newcase
|
||||||
|
./create_newcase --case testI --res f19_g17_gl4 --compset I2000Clm60BgcCrop
|
||||||
|
# create new "I" case for default machine at 1.9x2.5_gx1v7
|
||||||
|
# "I2000Clm60BgcCrop" case is clm6_0 physics, CDEPS, and inactive ice/ocn/glc
|
||||||
|
# and MOSART for river-routing
|
||||||
|
cd testI
|
||||||
|
./case.setup # create the $CASE.run file
|
||||||
|
./case.build # build model and create namelists
|
||||||
|
./case.submit # submit script
|
||||||
|
# (NOTE: ./xmlchange RESUBMIT=10 to set RESUBMIT to number
|
||||||
|
# # of times to automatically resubmit -- 10 in this example)
|
||||||
|
|
||||||
42
README.CHECKLIST.new_case
Normal file
42
README.CHECKLIST.new_case
Normal file
@ -0,0 +1,42 @@
|
|||||||
|
$CTSMROOT/README.CHECKLIST.new_case 03/01/2021
|
||||||
|
|
||||||
|
This is a check list of things to do when setting up a new case in order to help ensure everything is correct. There
|
||||||
|
are lots of tiny details that need to be right and it's easy to get something wrong. So the first screening to make
|
||||||
|
sure it's right is for you to carefully check through your case and make sure it's right.
|
||||||
|
|
||||||
|
The following assumes you have created a new case and are in it's case directory.
|
||||||
|
|
||||||
|
General Checklist to always do:
|
||||||
|
|
||||||
|
- Make sure CLM_ env settings are correct
|
||||||
|
(./xmlquery -p CLM)
|
||||||
|
- Make sure you are using the correct CLM_PHYSICS_VERSION
|
||||||
|
(./xmlquery -p CLM_PHYSICS_VERSION)
|
||||||
|
- Make sure you are running the appropriate overall CLM vegetation model.
|
||||||
|
The "-bgc" option of either Satellite Phenology (sp), or
|
||||||
|
Full BioGeoChemistry (bgc), or FATES (fates)
|
||||||
|
(./xmlquery -p CLM_BLDNML_OPTS)
|
||||||
|
- Also if you are running the bgc model, check to see if you should be running the prognostic crop model
|
||||||
|
(option -crop in CLM_BLDNML_OPTS)
|
||||||
|
- Make sure the LND_TUNING_MODE is correct
|
||||||
|
(./xmlquery LND_TUNING_MODE)
|
||||||
|
- For an "I compset" make sure you are running over the right forcing years
|
||||||
|
(usually ./xmlquery -p DATM_YR)
|
||||||
|
- Again for an "I compset" make sure the DATM streams are operating over the right years
|
||||||
|
(look at the CaseDocs/datm.streams.xml file)
|
||||||
|
- First and align year for streams should be the start year of a historical simulation
|
||||||
|
(./xmlquery RUN_STARTDATE)
|
||||||
|
(grep stream_year_first CaseDocs/lnd_in; grep model_year_align CaseDocs/lnd_in)
|
||||||
|
- Last year for streams should be the last year you are going to run to (or beyond it)
|
||||||
|
(grep stream_year_last CaseDocs/lnd_in)
|
||||||
|
- Make sure you are starting from appropriate spunup initial conditions
|
||||||
|
(Check the run-type with: ./xmlquery RUN_TYPE)
|
||||||
|
(check finidat for a startup or hybrid simulation: grep finidat CaseDocs/lnd_in)
|
||||||
|
(check nrevsn for a branch simulation: grep nrevsn CaseDocs/lnd_in)
|
||||||
|
- Run for a month (or some short period) and go over the log files and especially the settings and files read in them.
|
||||||
|
(For an I case you especially want to look at the lnd.log and atm.log files)
|
||||||
|
|
||||||
|
Some other suggestions on things that can be done:
|
||||||
|
|
||||||
|
- Compare namelist files to an existing case if you are doing something almost the same as a previous simulation.
|
||||||
|
- Ask another collaborator to look over your case directory
|
||||||
51
README.NUOPC_driver.md
Normal file
51
README.NUOPC_driver.md
Normal file
@ -0,0 +1,51 @@
|
|||||||
|
# $CTSMROOT/README.NUOPC_driver
|
||||||
|
|
||||||
|
CTSM now by default uses the NUOPC based CMEPS driver!
|
||||||
|
|
||||||
|
|
||||||
|
## What's new?
|
||||||
|
|
||||||
|
MESH Files:
|
||||||
|
Mesh files to describe grids are new in both the driver namelist and for example in any
|
||||||
|
streams files.
|
||||||
|
Full ESMF Library is used:
|
||||||
|
The full ESMF Library is used and required to be built in order to run the model.
|
||||||
|
Single Point cases:
|
||||||
|
Single point cases can now set their location using PTS_LAT and PTS_LON.
|
||||||
|
|
||||||
|
## What's removed?
|
||||||
|
|
||||||
|
Domain files are no longer used. And mapping for regriding is created on the fly
|
||||||
|
rather than using fixed mapping files in almost all cases. Runoff mapping files
|
||||||
|
still need to be generated offline.
|
||||||
|
|
||||||
|
## What files change?
|
||||||
|
|
||||||
|
rpointer.drv becomes rpointer.cpl
|
||||||
|
cpl.log.* files get's split into med.log.* and drv.log.*
|
||||||
|
user_datm.streams.txt.* file changes goes into the user_nl_datm_streams files
|
||||||
|
datm.streams.txt.* files are all in one file called datm.streams.xml
|
||||||
|
|
||||||
|
## What XML variables change in your case?
|
||||||
|
|
||||||
|
DATM_CLMNCEP_YR_* variables change to DATM_YR_*
|
||||||
|
|
||||||
|
## New obscure options:
|
||||||
|
|
||||||
|
ESMF_AWARE_THREADING --- ESMF is aware of threading (can have differing number of threads in components)
|
||||||
|
CREATE_ESMF_PET_FILES -- Create output log files from ESMF for each Processor (PET)
|
||||||
|
ESMF_VERBOSITY_LEVEL --- Verbosity level for ESMF logging
|
||||||
|
ESMF_PROFILING_LEVEL --- Verbosity level for ESMF profiling
|
||||||
|
|
||||||
|
nuopc.runseq is a text file that determines how the driver operates. You can change the operation
|
||||||
|
by having an updated copy in your case directory.
|
||||||
|
|
||||||
|
|
||||||
|
## What if I want to use the MCT driver?
|
||||||
|
|
||||||
|
The MCT driver is now deprecated, and will be removed. So at this point we don't
|
||||||
|
suggest using it anymore.
|
||||||
|
|
||||||
|
For more notes see:
|
||||||
|
|
||||||
|
https://docs.google.com/presentation/d/1yjiKSEV53JDAJbYxhpY2T9GTxlWFzQAn
|
||||||
67
README.md
Normal file
67
README.md
Normal file
@ -0,0 +1,67 @@
|
|||||||
|
# CTSM
|
||||||
|
|
||||||
|
[](https://doi.org/10.5281/zenodo.3739617)
|
||||||
|
|
||||||
|
## Overview and resources
|
||||||
|
|
||||||
|
The Community Terrestrial Systems Model.
|
||||||
|
|
||||||
|
This includes the Community Land Model (CLM5.0 and CLM4.5) of the Community Earth System Model.
|
||||||
|
|
||||||
|
For documentation, quick start, diagnostics, model output and
|
||||||
|
references, see
|
||||||
|
|
||||||
|
http://www.cesm.ucar.edu/models/cesm2.0/land/
|
||||||
|
|
||||||
|
and
|
||||||
|
|
||||||
|
https://escomp.github.io/ctsm-docs/
|
||||||
|
|
||||||
|
For help with how to work with CTSM in git, see
|
||||||
|
|
||||||
|
https://github.com/ESCOMP/CTSM/wiki/Quick-start-to-CTSM-development-with-git
|
||||||
|
|
||||||
|
and
|
||||||
|
|
||||||
|
https://github.com/ESCOMP/ctsm/wiki/Recommended-git-setup
|
||||||
|
|
||||||
|
For support with model use, troubleshooting, etc., please use the [CTSM
|
||||||
|
forum](https://bb.cgd.ucar.edu/cesm/forums/ctsm-clm-mosart-rtm.134/) or other appropriate forum (e.g., for
|
||||||
|
infrastructure/porting questions) through the [CESM forums](https://bb.cgd.ucar.edu/cesm/).
|
||||||
|
|
||||||
|
To get updates on CTSM tags and important notes on CTSM developments
|
||||||
|
join our low traffic email list:
|
||||||
|
|
||||||
|
https://groups.google.com/a/ucar.edu/forum/#!forum/ctsm-dev
|
||||||
|
|
||||||
|
(Send email to ctsm-software@ucar.edu if you have problems with any of this)
|
||||||
|
|
||||||
|
## CTSM code management team
|
||||||
|
|
||||||
|
CTSM code management is provided primarily by:
|
||||||
|
|
||||||
|
Software engineering team:
|
||||||
|
- [Erik Kluzek](https://github.com/ekluzek)
|
||||||
|
- [Bill Sacks](https://github.com/billsacks)
|
||||||
|
- [Sam Levis](https://github.com/slevisconsulting)
|
||||||
|
- [Adrianna Foster](https://github.com/adrifoster)
|
||||||
|
- [Sam Rabin](https://github.com/samsrabin)
|
||||||
|
- [Greg Lemieux](https://github.com/glemieux)
|
||||||
|
- [Ryan Knox](https://github.com/rgknox)
|
||||||
|
|
||||||
|
Science team:
|
||||||
|
- [Will Wieder](https://github.com/wwieder)
|
||||||
|
- [Dave Lawrence](https://github.com/dlawrenncar)
|
||||||
|
- [Danica Lombardozzi](https://github.com/danicalombardozzi)
|
||||||
|
- [Keith Oleson](https://github.com/olyson)
|
||||||
|
- [Sean Swenson](https://github.com/swensosc)
|
||||||
|
- [Peter Lawrence](https://github.com/lawrencepj1)
|
||||||
|
- Gordon Bonan
|
||||||
|
|
||||||
|
FATES Project:
|
||||||
|
- https://github.com/NGEET/fates?tab=readme-ov-file
|
||||||
|
|
||||||
|
Perturbed Parameter Experiment (PPE) Science team:
|
||||||
|
- [Katie Dagon] (https://github.com/katiedagon)
|
||||||
|
- [Daniel Kennedy] (https://github.com/djk2120)
|
||||||
|
- [Linnea Hawkins] (https://github.com/linniahawkins)
|
||||||
132
README_EXTERNALS.rst
Normal file
132
README_EXTERNALS.rst
Normal file
@ -0,0 +1,132 @@
|
|||||||
|
Obtaining the full model code and associated scripting infrastructure
|
||||||
|
=====================================================================
|
||||||
|
|
||||||
|
[!CAUTION]
|
||||||
|
This is deprecated and will be replaced with git submodules. See
|
||||||
|
https://github.com/ESCOMP/CTSM/pull/2443
|
||||||
|
|
||||||
|
|
||||||
|
CTSM is released via GitHub. You will need some familiarity with git in order
|
||||||
|
to modify the code and commit these changes. However, to simply checkout and run the
|
||||||
|
code, no git knowledge is required other than what is documented in the following steps.
|
||||||
|
|
||||||
|
To obtain the CTSM code you need to do the following:
|
||||||
|
|
||||||
|
#. Clone the repository. ::
|
||||||
|
|
||||||
|
git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox
|
||||||
|
|
||||||
|
This will create a directory ``my_ctsm_sandbox/`` in your current working directory.
|
||||||
|
|
||||||
|
#. Run the script **manage_externals/checkout_externals**. ::
|
||||||
|
|
||||||
|
./manage_externals/checkout_externals
|
||||||
|
|
||||||
|
The **checkout_externals** script is a package manager that will
|
||||||
|
populate the ctsm directory with the relevant versions of each of the
|
||||||
|
components along with the CIME infrastructure code.
|
||||||
|
|
||||||
|
At this point you have a working version of CTSM.
|
||||||
|
|
||||||
|
To see full details of how to set up a case, compile and run, see the CIME documentation at http://esmci.github.io/cime/ .
|
||||||
|
|
||||||
|
More details on checkout_externals
|
||||||
|
----------------------------------
|
||||||
|
|
||||||
|
The file **Externals.cfg** in your top-level CTSM directory tells
|
||||||
|
**checkout_externals** which tag/branch of each component should be
|
||||||
|
brought in to generate your sandbox. **Externals_CLM.cfg** is used similarly to point to the correct version of FATES (and possibly other CTSM-specific externals in the future); the below instructions referring to **Externals.cfg** also apply to modifying **Externals_CLM.cfg**.
|
||||||
|
|
||||||
|
NOTE: checkout_externals will always attempt
|
||||||
|
to make the working copy exactly match the externals description. If
|
||||||
|
you manually modify an external without updating Externals.cfg, e.g. switch
|
||||||
|
to a different tag, then rerunning checkout_externals will switch you
|
||||||
|
back to the external described in Externals.cfg. See below
|
||||||
|
documentation `Customizing your CTSM sandbox`_ for more details.
|
||||||
|
|
||||||
|
**You need to rerun checkout_externals whenever Externals.cfg has
|
||||||
|
changed** (unless you have already manually updated the relevant
|
||||||
|
external(s) to have the correct branch/tag checked out). Common times
|
||||||
|
when this is needed are:
|
||||||
|
|
||||||
|
* After checking out a new CTSM branch/tag
|
||||||
|
|
||||||
|
* After merging some other CTSM branch/tag into your currently
|
||||||
|
checked-out branch
|
||||||
|
|
||||||
|
**checkout_externals** must be run from the root of the source
|
||||||
|
tree. For example, if you cloned CTSM with::
|
||||||
|
|
||||||
|
git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox
|
||||||
|
|
||||||
|
then you must run **checkout_externals** from
|
||||||
|
``/path/to/my_ctsm_sandbox``.
|
||||||
|
|
||||||
|
To see more details of **checkout_externals**, issue ::
|
||||||
|
|
||||||
|
./manage_externals/checkout_externals --help
|
||||||
|
|
||||||
|
Customizing your CTSM sandbox
|
||||||
|
=============================
|
||||||
|
|
||||||
|
There are several use cases to consider when you want to customize or modify your CTSM sandbox.
|
||||||
|
|
||||||
|
Switching to a different CTSM branch or tag
|
||||||
|
-------------------------------------------
|
||||||
|
|
||||||
|
If you have already checked out a branch or tag and **HAVE NOT MADE ANY
|
||||||
|
MODIFICATIONS** it is simple to change your sandbox. Say that you
|
||||||
|
checked out ctsm1.0.0 but really wanted to have ctsm1.1.0;
|
||||||
|
you would simply do the following::
|
||||||
|
|
||||||
|
git checkout ctsm1.1.0
|
||||||
|
./manage_externals/checkout_externals
|
||||||
|
|
||||||
|
You should **not** use this method if you have made any source code
|
||||||
|
changes, or if you have any ongoing CTSM cases that were created from
|
||||||
|
this sandbox. In these cases, it is often easiest to do a second **git
|
||||||
|
clone**.
|
||||||
|
|
||||||
|
Pointing to a different version of a component
|
||||||
|
----------------------------------------------
|
||||||
|
|
||||||
|
Each entry in **Externals.cfg** has the following form (we use CIME as an
|
||||||
|
example below)::
|
||||||
|
|
||||||
|
[cime]
|
||||||
|
local_path = cime
|
||||||
|
protocol = git
|
||||||
|
repo_url = https://github.com/CESM-Development/cime
|
||||||
|
tag = cime5.4.0-alpha.20
|
||||||
|
required = True
|
||||||
|
|
||||||
|
Each entry specifies either a tag, a hash or a branch. To point to a new tag:
|
||||||
|
|
||||||
|
#. Modify the relevant entry/entries in **Externals.cfg** (e.g., changing
|
||||||
|
``cime5.4.0-alpha.20`` to ``cime5.4.0-alpha.21`` above)
|
||||||
|
|
||||||
|
#. Checkout the new component(s)::
|
||||||
|
|
||||||
|
./manage_externals/checkout_externals
|
||||||
|
|
||||||
|
To point to a hash, the process is the same, except also change ``tag = ...`` to ``hash = ...``.
|
||||||
|
|
||||||
|
To point to a branch, use ``branch = ...``. Pointing to a branch means that, each time you run ``manage_externals/checkout_externals`` you will get the current latest version of that branch. This can be convenient for in-progress development work, but should not be used when you need a stable version for scientific simulations. There are a number of gotchas with this workflow, so in general you should default to pointing to fixed hashes. (For CTSM master, we require a fixed hash or, usually, a tag.)
|
||||||
|
|
||||||
|
Keep in mind that changing individual components from a tag may result
|
||||||
|
in an invalid model (won't compile, won't run, not scientifically
|
||||||
|
meaningful) and is unsupported.
|
||||||
|
|
||||||
|
Committing your change to Externals.cfg
|
||||||
|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||||
|
|
||||||
|
After making this change, it's a good idea to commit the change in your
|
||||||
|
local CTSM git repository. First create a branch in your local
|
||||||
|
repository, then commit it. (Unlike with subversion, branches are stored
|
||||||
|
locally unless you explicitly push them up to GitHub. Feel free to
|
||||||
|
create whatever local branches you'd like.) For example::
|
||||||
|
|
||||||
|
git checkout -b my_ctsm_branch
|
||||||
|
git add Externals.cfg
|
||||||
|
git commit -m "Update CIME to cime5.4.0-alpha.20"
|
||||||
|
|
||||||
5411
bld/CLMBuildNamelist.pm
Normal file
5411
bld/CLMBuildNamelist.pm
Normal file
File diff suppressed because it is too large
Load Diff
47
bld/README
Normal file
47
bld/README
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
$CTSMROOT/bld/README Jun/08/2018
|
||||||
|
|
||||||
|
CLM build and configure directory and scripts. Scripts to help
|
||||||
|
you prepare to build CLM as a component within CESM, and setup
|
||||||
|
a namelist for it.
|
||||||
|
|
||||||
|
Important files/directories:
|
||||||
|
|
||||||
|
--------- Configure and build scripts
|
||||||
|
--------- (These scripts are also used by the cesm/cime scripts)
|
||||||
|
|
||||||
|
config_files/clm_phys_vers.pm ------------- Perl module to handle different CLM versions
|
||||||
|
config_files/config_definition_ctsm.xml --- XML file defining all CTSM configuration items
|
||||||
|
|
||||||
|
--------- Scripts to build the namelists
|
||||||
|
--------- (These scripts are also used by the cesm/cime scripts)
|
||||||
|
build-namelist --- Build the namelists needed
|
||||||
|
|
||||||
|
|
||||||
|
env_run.xml --- Sample case runtime environment variables, so build-namelist can run outside of a case directory.
|
||||||
|
|
||||||
|
--------- Test scripts directory
|
||||||
|
unit_testers --- Directory of scripts to test scipts in this directory
|
||||||
|
(most notably build-namelist)
|
||||||
|
|
||||||
|
---------- XML Files describing namelists in namelist_files
|
||||||
|
namelist_files/namelist_defaults_ctsm.xml --------- List of default values for the ctsm namelist
|
||||||
|
namelist_files/namelist_defaults_overall.xml ------ List of default values for overall settings
|
||||||
|
namelist_files/namelist_defaults_usr_files.xml ---- List of default values for the user-files
|
||||||
|
namelist_files/namelist_definition_ctsm.xml -------- Definition of all namelist items for ctsm
|
||||||
|
namelist_files/namelist_definition.xsl ------------ Describes how to view the xml file as html
|
||||||
|
namelist_files/namelist_defaults_drydep.xml ------- List of default values for the dry deposition module.
|
||||||
|
namelist_files/use_cases -------------------------- Specific configurations that build-namelist uses
|
||||||
|
namelist_files/use_cases/README ------------------- File explaining the naming convention for use_cases
|
||||||
|
|
||||||
|
---------- Driver namelist files, duplicated information from cime/driver/cime_config
|
||||||
|
namelist_files/namelist_defaults_drv.xml ---------- List of default values for driver namelist defaults
|
||||||
|
namelist_files/namelist_defaults_drydep.xml ------- List of default values for dry deposition fields
|
||||||
|
namelist_files/namelist_defaults_fire_emis.xml ---- List of default values for fire emission fields
|
||||||
|
namelist_files/namelist_definition_drv.xml -------- Definition of all driver namelist items
|
||||||
|
namelist_files/namelist_definition_drv_flds.xml --- Definition of add driver fieldsnamelist items
|
||||||
|
|
||||||
|
|
||||||
|
---------- XML helper files
|
||||||
|
namelist_files/LogMessages.pm ---- Perl module to handle log output
|
||||||
|
namelist_files/history_fields.xsl - Style sheet for history fields as created by script that lists all of the
|
||||||
|
history fields from the source files (../src/main/findHistFields.pl)
|
||||||
23
bld/build-namelist
Normal file
23
bld/build-namelist
Normal file
@ -0,0 +1,23 @@
|
|||||||
|
#!/usr/bin/env perl
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
#
|
||||||
|
# clm build-namelist driver
|
||||||
|
#
|
||||||
|
# Placing all of build-namelist into CLMBuildNamelist.pm means we can unit test the module.
|
||||||
|
#
|
||||||
|
require 5;
|
||||||
|
|
||||||
|
use strict;
|
||||||
|
|
||||||
|
BEGIN {
|
||||||
|
# ensure that the cesm create_X scripts can find CLMBuildNamelist.pm
|
||||||
|
use File::Basename qw(dirname);
|
||||||
|
use Cwd qw(abs_path);
|
||||||
|
my $dirname = dirname(abs_path($0));
|
||||||
|
my @dirs = ($dirname, );
|
||||||
|
unshift @INC, @dirs;
|
||||||
|
}
|
||||||
|
|
||||||
|
use CLMBuildNamelist qw(main);
|
||||||
|
|
||||||
|
CLMBuildNamelist::main();
|
||||||
108
bld/config_files/clm_phys_vers.pm
Normal file
108
bld/config_files/clm_phys_vers.pm
Normal file
@ -0,0 +1,108 @@
|
|||||||
|
package config_files::clm_phys_vers;
|
||||||
|
my $pkg_nm = 'config_files::clm_phys_vers';
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
#
|
||||||
|
# SYNOPSIS
|
||||||
|
#
|
||||||
|
# require config_files::clm_phys_vers;
|
||||||
|
#
|
||||||
|
# my $phys = config_files::clm_phys_vers->new("clm5_0");
|
||||||
|
# print $phys->as_string();
|
||||||
|
#
|
||||||
|
# DESCRIPTION
|
||||||
|
#
|
||||||
|
# Enter the physics version as a string, with a list of valid versions, and have the ability to convert it to
|
||||||
|
# different formats.
|
||||||
|
#
|
||||||
|
# COLLABORATORS: None
|
||||||
|
#
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
#
|
||||||
|
# Date Author Modification
|
||||||
|
# 03/06/2014 Erik Kluzek creation
|
||||||
|
#
|
||||||
|
#--------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
use strict;
|
||||||
|
use bigint;
|
||||||
|
#use warnings;
|
||||||
|
#use diagnostics;
|
||||||
|
|
||||||
|
my @version_strings = ("clm4_5", "clm5_0", "clm5_1", "clm6_0");
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub new {
|
||||||
|
# Constructor, enter version string as argument
|
||||||
|
my $class = shift;
|
||||||
|
my $vers_string = shift;
|
||||||
|
|
||||||
|
my $nm = "$class\:\:new";
|
||||||
|
my $self = {};
|
||||||
|
bless($self, $class);
|
||||||
|
$self->__validate_vers__( $vers_string );
|
||||||
|
$self->{'vers_string'} = $vers_string;
|
||||||
|
return( $self );
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub __validate_vers__ {
|
||||||
|
# Make sure the version string is a valid one
|
||||||
|
my $class = shift;
|
||||||
|
my $vers_string = shift;
|
||||||
|
|
||||||
|
my $found = undef;
|
||||||
|
foreach my $i (0..$#version_strings) {
|
||||||
|
if ( $vers_string eq $version_strings[$i] ) {
|
||||||
|
$found = 1;
|
||||||
|
last;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
if ( ! defined($found) ) {
|
||||||
|
die "NOT a valid CLM version: $vers_string\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub as_string {
|
||||||
|
# Return the physics version as a string
|
||||||
|
my $self = shift;
|
||||||
|
|
||||||
|
my $phys = $self->{'vers_string'};
|
||||||
|
return( $phys );
|
||||||
|
}
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
# Unit testing of above
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
if ( ! defined(caller) && $#ARGV == -1 ) {
|
||||||
|
package phys_vers_unit_tester;
|
||||||
|
|
||||||
|
require Test::More;
|
||||||
|
Test::More->import( );
|
||||||
|
|
||||||
|
plan( tests=>3 );
|
||||||
|
|
||||||
|
sub testit {
|
||||||
|
print "unit tester\n";
|
||||||
|
my %lastv;
|
||||||
|
my @vers_list = ( "clm4_5", "clm5_0", "clm5_1", "clm6_0" );
|
||||||
|
foreach my $vers ( @vers_list ) {
|
||||||
|
my $phys = config_files::clm_phys_vers->new($vers);
|
||||||
|
isa_ok($phys, "config_files::clm_phys_vers", "created clm_phys_vers object");
|
||||||
|
print "$vers: string: ".$phys->as_string()."\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
# Determine if you should run the unit test or if this is being called from a require statement
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
if ( defined(caller) ) {
|
||||||
|
1 # to make use or require happy
|
||||||
|
} elsif ( $#ARGV == -1 ) {
|
||||||
|
&phys_vers_unit_tester::testit();
|
||||||
|
}
|
||||||
72
bld/config_files/config_definition.xsl
Normal file
72
bld/config_files/config_definition.xsl
Normal file
@ -0,0 +1,72 @@
|
|||||||
|
<?xml version='1.0'?>
|
||||||
|
|
||||||
|
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
|
||||||
|
|
||||||
|
<xsl:template match="/">
|
||||||
|
<html>
|
||||||
|
<xsl:apply-templates/>
|
||||||
|
</html>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
<xsl:template match="config_definition">
|
||||||
|
<head>
|
||||||
|
<title>CLM Configuration Definition</title>
|
||||||
|
</head>
|
||||||
|
<body>
|
||||||
|
<h2>CLM Configuration Definition</h2>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption><font size="larger"><bold>CLM Physics Configurations</bold></font></caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Value</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th>Valid Values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='physics']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption><font size="larger"><bold>CLM Biogeochemistry Configurations</bold></font></caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Value</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th>Valid Value</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='bgc']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption><font size="larger"><bold>Configuration Directories</bold></font></caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Value</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th>Valid Value</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='directories']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
</body>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
<xsl:template match="entry">
|
||||||
|
<tr>
|
||||||
|
<td rowspan="2"><font color="#ff0000"><xsl:value-of select="@id"/></font></td>
|
||||||
|
<td rowspan="2"><xsl:value-of select="@value"/></td>
|
||||||
|
<td><xsl:apply-templates/></td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td><b>Valid values: </b> <xsl:value-of select="@valid_values"/></td>
|
||||||
|
</tr>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
|
||||||
|
</xsl:stylesheet>
|
||||||
45
bld/config_files/config_definition_ctsm.xml
Normal file
45
bld/config_files/config_definition_ctsm.xml
Normal file
@ -0,0 +1,45 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="config_definition.xsl" ?>
|
||||||
|
|
||||||
|
<config_definition>
|
||||||
|
|
||||||
|
<entry id="phys"
|
||||||
|
valid_values="clm4_5,clm5_0,clm5_1,clm6_0"
|
||||||
|
value="clm4_5"
|
||||||
|
category="physics">
|
||||||
|
Specifies either clm4_5, clm5_0, clm5_1 (deprecated), or clm6_0 physics
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="clm_root"
|
||||||
|
value=""
|
||||||
|
category="directories">
|
||||||
|
Root directory of CLM source distribution (directory above CLM configure).
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="comp_intf"
|
||||||
|
valid_values="ESMF,MCT,cpl_\$COMP"
|
||||||
|
value="MCT"
|
||||||
|
category="directories">
|
||||||
|
Component framework interface to use
|
||||||
|
(Model Coupling Toolkit, or Earth System Modeling Framework)
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="usr_src"
|
||||||
|
value=""
|
||||||
|
list="1"
|
||||||
|
category="directories">
|
||||||
|
User source directories to prepend to the filepath. Multiple directories
|
||||||
|
are specified as a comma separated list with no embedded white space.
|
||||||
|
Normally this is SourceMods/src.clm in your case.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="cppdefs"
|
||||||
|
value=""
|
||||||
|
category="physics">
|
||||||
|
User specified CPP defines to append to Makefile defaults.
|
||||||
|
Note: It's recommended to use configure options to set standard CPP values rather
|
||||||
|
than defining them here.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
</config_definition>
|
||||||
14
bld/env_run.xml
Normal file
14
bld/env_run.xml
Normal file
@ -0,0 +1,14 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<config_definition>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
|
||||||
|
Sample env_run.xml file that allows build-namelist to be run for testing in this directory.
|
||||||
|
|
||||||
|
-->
|
||||||
|
<entry id="DIN_LOC_ROOT" value="MYDINLOCROOT" />
|
||||||
|
<entry id="GLC_TWO_WAY_COUPLING" value="FALSE" />
|
||||||
|
<entry id="NEONSITE" value="" />
|
||||||
|
|
||||||
|
</config_definition>
|
||||||
244
bld/namelist_files/LogMessages.pm
Normal file
244
bld/namelist_files/LogMessages.pm
Normal file
@ -0,0 +1,244 @@
|
|||||||
|
package namelist_files::LogMessages;
|
||||||
|
my $pkg_nm = 'namelist_files::LogMessages';
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
#
|
||||||
|
# SYNOPSIS
|
||||||
|
#
|
||||||
|
# require namelist_files::LogMessages;
|
||||||
|
#
|
||||||
|
# my %opts;
|
||||||
|
# my $log = namelist_files::LogMessages->new("ProgName", \%opts);
|
||||||
|
# $log->message("message to print");
|
||||||
|
# $log->verbose_message("message to print only if verbose mode is on");
|
||||||
|
# $log->warning("Warning message");
|
||||||
|
# $log->exit_message("clean exit");
|
||||||
|
# $log->fatal_error("die with fatal error");
|
||||||
|
# $log->final_exit("Final message to send (and exit");
|
||||||
|
#
|
||||||
|
#
|
||||||
|
# DESCRIPTION
|
||||||
|
#
|
||||||
|
# Handles log messages for perl. Sets up log messages according to verbose
|
||||||
|
# or silent setting. It also handles warnings printing them, but on finalization
|
||||||
|
# aborting unless ignore_warnings was set.
|
||||||
|
#
|
||||||
|
# COLLABORATORS: None
|
||||||
|
#
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
#
|
||||||
|
# Date Author Modification
|
||||||
|
# 10/06/2017 Erik Kluzek creation
|
||||||
|
#
|
||||||
|
#--------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
use strict;
|
||||||
|
#use warnings;
|
||||||
|
#use diagnostics;
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub new {
|
||||||
|
my $class = shift;
|
||||||
|
my $ProgName = shift;
|
||||||
|
my %opts = %{shift()};
|
||||||
|
|
||||||
|
my $nm = "$class\:\:new";
|
||||||
|
my $self = {};
|
||||||
|
bless($self, $class);
|
||||||
|
$self->{'nwarns'} = 0;
|
||||||
|
$self->{'verbosity'} = 1;
|
||||||
|
$self->{'NO_EXIT'} = $opts{'NO_EXIT'};
|
||||||
|
$self->{'ProgName'} = $ProgName;
|
||||||
|
$self->{'ignore_warnings'} = $opts{'ignore_warnings'};
|
||||||
|
$self->__set_print_level( \%opts );
|
||||||
|
return( $self );
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub __set_print_level {
|
||||||
|
my $self = shift;
|
||||||
|
# Define print levels:
|
||||||
|
# 0 - only issue fatal error messages
|
||||||
|
# 1 - only informs what files are created (default)
|
||||||
|
# 2 - verbose
|
||||||
|
my %opts = %{shift()};
|
||||||
|
|
||||||
|
if ( $opts{'silent'} && $opts{'verbose'} ) {
|
||||||
|
$self->fatal_error( "Can not set both the -silent and the -verbose options -- set one or the other" );
|
||||||
|
}
|
||||||
|
my $verbosity = 1;
|
||||||
|
if ($opts{'silent'}) { $verbosity = 0; }
|
||||||
|
if ($opts{'verbose'}) { $verbosity = 2; }
|
||||||
|
$self->{'verbosity'} = $verbosity;
|
||||||
|
$self->{'print_verbose'} = 2;
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub message {
|
||||||
|
my $self = shift;
|
||||||
|
my ($message) = @_;
|
||||||
|
if ($self->{'verbosity'} > 0) {
|
||||||
|
print "$message\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub verbose_message {
|
||||||
|
my $self = shift;
|
||||||
|
|
||||||
|
my ($message) = @_;
|
||||||
|
if ($self->{'verbosity'} >= $self->{'print_verbose'}) {
|
||||||
|
print "$message\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub nwarns {
|
||||||
|
my $self = shift;
|
||||||
|
|
||||||
|
return( $self->{'nwarns'} );
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub final_exit {
|
||||||
|
my $self = shift;
|
||||||
|
my ($message) = @_;
|
||||||
|
if ( $self->{'nwarns'} > 0 ) {
|
||||||
|
$self->message( "\n\nYou ran with the -ignore_warnings options and allowed $self->{'nwarns'} to go past\n" );
|
||||||
|
}
|
||||||
|
$self->verbose_message( $message );
|
||||||
|
if ( $self->{'NO_EXIT'} ) {
|
||||||
|
die
|
||||||
|
} else {
|
||||||
|
exit;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
# Some simple subroutines to do a clean exit, print warning, or a fatal error
|
||||||
|
|
||||||
|
sub exit_message {
|
||||||
|
my $self = shift;
|
||||||
|
my ($message) = @_;
|
||||||
|
print "$self->{ProgName} : $message\n";
|
||||||
|
if ( $self->{'NO_EXIT'} ) {
|
||||||
|
die
|
||||||
|
} else {
|
||||||
|
exit;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub warning {
|
||||||
|
my $self = shift;
|
||||||
|
my $message = shift;
|
||||||
|
|
||||||
|
$self->{'nwarns'} = $self->{'nwarns'} + 1;
|
||||||
|
my $func_name = (caller(1))[3];
|
||||||
|
if ( $self->{'ignore_warnings'} ) {
|
||||||
|
print "Warning : $self->{ProgName}::${func_name}() : $message\n\n";
|
||||||
|
} else {
|
||||||
|
die "Warning : $self->{ProgName}::${func_name}() : $message\n" .
|
||||||
|
" -- Add -ignore_warnings option to CLM_BLDNML_OPTS to ignore this warning\n\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
sub fatal_error {
|
||||||
|
my $self = shift;
|
||||||
|
my ($message) = @_;
|
||||||
|
my $func_name = (caller(1))[3];
|
||||||
|
die "ERROR : $self->{ProgName}::${func_name}() : $message\n";
|
||||||
|
}
|
||||||
|
|
||||||
|
#-------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
# Unit testing of above
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
if ( ! defined(caller) && $#ARGV == -1 ) {
|
||||||
|
package LogMessage_unit_tester;
|
||||||
|
|
||||||
|
require Test::More;
|
||||||
|
Test::More->import( );
|
||||||
|
|
||||||
|
plan( tests=>11 );
|
||||||
|
|
||||||
|
sub testit {
|
||||||
|
print "unit tester\n";
|
||||||
|
my %opts;
|
||||||
|
my $message;
|
||||||
|
|
||||||
|
# Standard verbose level, test all methods
|
||||||
|
$opts{'NO_EXIT'} = 1;
|
||||||
|
my $log = namelist_files::LogMessages->new("ProgName", \%opts);
|
||||||
|
isa_ok($log, "namelist_files::LogMessages", "Created LogMessages object");
|
||||||
|
$log->message("message to print");
|
||||||
|
$log->verbose_message("YOU SHOULD NOT SEE THIS MESSAGE BECAUSE IT IS VERBOSE AND VERBOSE NOT ON");
|
||||||
|
$message = "Warning message";
|
||||||
|
is ( $log->nwarns(), 0, "Make sure have zero warnings" );
|
||||||
|
eval{ $log->warning($message); };
|
||||||
|
like( $@, qr/$message/, "check that a warning dies without ignore_warnings option" );
|
||||||
|
is ( $log->nwarns(), 1, "Make sure have one warning" );
|
||||||
|
$message = "die with fatal error";
|
||||||
|
eval{ $log->fatal_error($message); };
|
||||||
|
like( $@, qr/$message/, "check that a fatal_error dies" );
|
||||||
|
$message = "exit with exit message";
|
||||||
|
eval{ $log->exit_message($message); };
|
||||||
|
like( $@, qr/Died/, "check that a exit_message exits" );
|
||||||
|
$message = "Final message to send";
|
||||||
|
eval{ $log->final_exit($message); };
|
||||||
|
like( $@, qr/Died/, "check that a final exits" );
|
||||||
|
|
||||||
|
# Test ignore_warnings option and verbose mode
|
||||||
|
$opts{'ignore_warnings'} = 1;
|
||||||
|
$opts{'verbose'} = 1;
|
||||||
|
$opts{'NO_EXIT'} = 1;
|
||||||
|
$log = namelist_files::LogMessages->new("ProgName", \%opts);
|
||||||
|
isa_ok($log, "namelist_files::LogMessages", "Created LogMessages object");
|
||||||
|
$log->verbose_message("message to print only if verbose mode is on");
|
||||||
|
$log->warning("Warning message");
|
||||||
|
$log->warning("Warning message2");
|
||||||
|
$log->warning("Warning message3");
|
||||||
|
$log->warning("Warning message4");
|
||||||
|
$log->warning("Warning message5");
|
||||||
|
is ( $log->nwarns(), 5, "Make sure have five warnings" );
|
||||||
|
eval{ $log->final_exit($message); };
|
||||||
|
print "content: $@\n";
|
||||||
|
like( $@, qr/Died/, "check that a final_exit with warning exits" );
|
||||||
|
# silent mode
|
||||||
|
$opts{'ignore_warnings'} = 0;
|
||||||
|
$opts{'verbose'} = 0;
|
||||||
|
$opts{'silent'} = 1;
|
||||||
|
$opts{'NO_EXIT'} = 1;
|
||||||
|
$log = namelist_files::LogMessages->new("ProgName", \%opts);
|
||||||
|
$log->message("YOU SHOULD NOT SEE THIS MESSAGE BECAUSE SILENT MODE IS ON");
|
||||||
|
$log->verbose_message("YOU SHOULD NOT SEE THIS VERBOSE MESSAGE BECAUSE SILENT MODE IS ON");
|
||||||
|
# Should die with error if both silent and verbose mode is on
|
||||||
|
$opts{'ignore_warnings'} = 0;
|
||||||
|
$opts{'verbose'} = 1;
|
||||||
|
$opts{'silent'} = 1;
|
||||||
|
$opts{'NO_EXIT'} = 1;
|
||||||
|
eval{ $log = namelist_files::LogMessages->new("ProgName", \%opts); };
|
||||||
|
print "content: $@\n";
|
||||||
|
like( $@, qr/ERROR : /, "check that died if both verbose and silent mode is on" );
|
||||||
|
print "\nSuccessfully ran all tests\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
# Determine if you should run the unit test or if this is being called from a require statement
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
if ( defined(caller) ) {
|
||||||
|
1 # to make use or require happy
|
||||||
|
} elsif ( $#ARGV == -1 ) {
|
||||||
|
&LogMessage_unit_tester::testit();
|
||||||
|
}
|
||||||
@ -0,0 +1,58 @@
|
|||||||
|
# Steps for interpolating out-of-the-box initial conditions
|
||||||
|
|
||||||
|
These are the steps that should be taken when interpolating (via
|
||||||
|
`init_interp`) out-of-the-box initial conditions files. This is often done
|
||||||
|
so that we'll have out-of-the-box initial conditions files that are
|
||||||
|
compatible with the current memory allocation, etc. (thus not requiring
|
||||||
|
`init_interp` to be run all the time).
|
||||||
|
|
||||||
|
Do the following for each initial conditions file you want to
|
||||||
|
interpolate:
|
||||||
|
|
||||||
|
1. From the latest master tag, create and run a test using the
|
||||||
|
appropriate compset and resolution for this initial conditions
|
||||||
|
file. Note that there may be other options (like carbon isotopes)
|
||||||
|
that also need to be turned on. While doing this, generate
|
||||||
|
baselines. e.g., run
|
||||||
|
`SMS_Ld1.f09_g17.I1850Clm50Sp.cheyenne_intel.clm-default` or
|
||||||
|
`SMS_Ld1.f09_g17.I1850Clm50BgcCrop.cheyenne_intel.clm-ciso`, with
|
||||||
|
baseline generation.
|
||||||
|
|
||||||
|
- Confirm that the test points to the desired, original finidat file,
|
||||||
|
and that `use_init_interp` is .true. by default.
|
||||||
|
|
||||||
|
2. Rename the `finidat_interp_dest.nc` file that was generated by this
|
||||||
|
test, giving it a name that matches the original initial conditions
|
||||||
|
file, but with a new date stamp. Move this file into place
|
||||||
|
(`$CESMDATAROOT/inputdata/lnd/clm2/initdata_map/`).
|
||||||
|
|
||||||
|
3. Add global metadata to the new file, mentioning the original file,
|
||||||
|
the test used to generate this new file, the tag used to run this
|
||||||
|
test, and a summary of what is different on this new version. For
|
||||||
|
example:
|
||||||
|
|
||||||
|
```
|
||||||
|
ncatted -h -a Notes_190111,global,c,c,'Interpolated from clmi.I1850Clm50BgcCrop.1366-01-01.0.9x1.25_gx1v6_simyr1850_c171213.nc. This is the finidat_interp_dest.nc file from SMS_Ln1.f09_g17.I1850Clm50BgcCrop.cheyenne_intel, run from ctsm1.0.dev022. Updates from the previous file are: (1) uses gx1v7 rather than gx1v6; (2) many inactive points are absent.'
|
||||||
|
```
|
||||||
|
|
||||||
|
4. Using `ncdump -h`, diff the headers of the new and old files, and
|
||||||
|
make sure that there are no unexpected differences. Especially look
|
||||||
|
for missing fields on the new file, which could indicate, for
|
||||||
|
example, that carbon isotopes were turned on in the original run but
|
||||||
|
not in your new run.
|
||||||
|
|
||||||
|
5. Update `namelist_defaults_ctsm.xml` to point to the new file.
|
||||||
|
|
||||||
|
- Be sure to change any attributes in both the `finidat` entry and
|
||||||
|
the `init_interp_attributes` entry for this file. In particular, if
|
||||||
|
the old file had the attribute `use_init_interp=".true."`, this
|
||||||
|
should now be removed.
|
||||||
|
|
||||||
|
6. Rerun the one-day test for which you generated baselines, comparing
|
||||||
|
against these baselines. Check the following:
|
||||||
|
|
||||||
|
- `use_init_interp` should be .false.
|
||||||
|
|
||||||
|
- The test should use the new `finidat` file
|
||||||
|
|
||||||
|
- The test should pass and be bit-for-bit with the baseline
|
||||||
46
bld/namelist_files/history_fields.xsl
Normal file
46
bld/namelist_files/history_fields.xsl
Normal file
@ -0,0 +1,46 @@
|
|||||||
|
<?xml version='1.0'?>
|
||||||
|
|
||||||
|
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
|
||||||
|
|
||||||
|
<xsl:template match="/">
|
||||||
|
<html>
|
||||||
|
<xsl:apply-templates/>
|
||||||
|
</html>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
<xsl:template match="history_fields">
|
||||||
|
<head>
|
||||||
|
<title>CLM History Fields</title>
|
||||||
|
</head>
|
||||||
|
<body>
|
||||||
|
<hr/>
|
||||||
|
<h2>Definition of CLM history variables</h2>
|
||||||
|
<p>Included in the table are the following pieces of information:</p>
|
||||||
|
<ul>
|
||||||
|
<li>Variable name.</li>
|
||||||
|
<li>Long name description.</li>
|
||||||
|
<li>units</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM History Fields</caption>
|
||||||
|
<tr>
|
||||||
|
<th>Name</th>
|
||||||
|
<th>Long-name</th>
|
||||||
|
<th>Units</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:for-each select="*">
|
||||||
|
<xsl:sort select="@name"/>
|
||||||
|
<tr>
|
||||||
|
<td><font color="#ff0000"><xsl:value-of select="@name"/></font></td>
|
||||||
|
<td><xsl:value-of select="@long_name"/></td>
|
||||||
|
<td><xsl:value-of select="@units"/></td>
|
||||||
|
</tr>
|
||||||
|
</xsl:for-each>
|
||||||
|
</table>
|
||||||
|
<hr/>
|
||||||
|
|
||||||
|
</body>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
</xsl:stylesheet>
|
||||||
173
bld/namelist_files/namelist_defaults.xsl
Normal file
173
bld/namelist_files/namelist_defaults.xsl
Normal file
@ -0,0 +1,173 @@
|
|||||||
|
<?xml version='1.0'?>
|
||||||
|
|
||||||
|
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
|
||||||
|
|
||||||
|
<xsl:template match="/">
|
||||||
|
<html>
|
||||||
|
<head>
|
||||||
|
<title>CLM Namelist Defaults</title>
|
||||||
|
</head>
|
||||||
|
<body>
|
||||||
|
<h2>Default Values for Namelist Variables</h2>
|
||||||
|
<p>Included in the table are the following pieces of information:</p>
|
||||||
|
<h3>Table headers include:</h3>
|
||||||
|
<ul>
|
||||||
|
<li>Name of variable</li>
|
||||||
|
<li>Horizontal grid resolution</li>
|
||||||
|
<li>Land ocean mask type</li>
|
||||||
|
<li>Simulation year</li>
|
||||||
|
<li>Simulation year range (for transient datasets)</li>
|
||||||
|
</ul>
|
||||||
|
<h3>Miscellaneous items include:</h3>
|
||||||
|
<ol>
|
||||||
|
<li>Biogeochemistry (BGC) type (none, CN, CNDV)</li>
|
||||||
|
<li>Initial condition date (ymd - year month day)</li>
|
||||||
|
<li>Initial condition time of day (tod) (sec)</li>
|
||||||
|
<li>Maximum number of Plant Function Types (maxpft)</li>
|
||||||
|
<li>Number of glacier multiple elevation classes (glc_nec)</li>
|
||||||
|
<li>Site specific point name (sitespf_pt)</li>
|
||||||
|
<li>Crop model (crop)</li>
|
||||||
|
<li>Data model forcing source (forcing)</li>
|
||||||
|
<li>Representative concentration pathway for future scenarios (SSP-rcp)</li>
|
||||||
|
<li>New good wood harvest (newwoodharv)</li>
|
||||||
|
<li>CN Spin-up mode (spinup)</li>
|
||||||
|
<li>Type of file (type)</li>
|
||||||
|
<li>Grid mapping to (to_hgrid)</li>
|
||||||
|
<li>Land-mask mapping to (to_lmask)</li>
|
||||||
|
<li>High resolution file? (hires)</li>
|
||||||
|
</ol>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>Namelist Defaults</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th>Horz. Grid</th>
|
||||||
|
<th>Mask</th>
|
||||||
|
<th>Sim year</th>
|
||||||
|
<th>Sim year range</th>
|
||||||
|
<th>Miscellaneous</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="5">Default Value for this Configuration</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:for-each select="namelist_defaults/*">
|
||||||
|
<xsl:sort select="name()"/>
|
||||||
|
<tr>
|
||||||
|
<td rowspan="2"><font color="#ff0000">
|
||||||
|
<xsl:value-of select="name()"/>
|
||||||
|
</font></td>
|
||||||
|
<td>
|
||||||
|
<xsl:choose>
|
||||||
|
<xsl:when test="string-length(@hgrid)>0">
|
||||||
|
<xsl:value-of select="@hgrid"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:when test="string-length(@frm_hgrid)>0">
|
||||||
|
<xsl:value-of select="@frm_hgrid"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:otherwise>
|
||||||
|
All res
|
||||||
|
</xsl:otherwise>
|
||||||
|
</xsl:choose>
|
||||||
|
</td>
|
||||||
|
<td>
|
||||||
|
<xsl:choose>
|
||||||
|
<xsl:when test="string-length(@mask)>0">
|
||||||
|
<xsl:value-of select="@mask"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:when test="string-length(@lmask)>0">
|
||||||
|
<xsl:value-of select="@lmask"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:when test="string-length(@frm_lmask)>0">
|
||||||
|
<xsl:value-of select="@frm_lmask"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:when test="name()='mksrf_fvegtyp'">
|
||||||
|
MODIS
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:otherwise>
|
||||||
|
All masks
|
||||||
|
</xsl:otherwise>
|
||||||
|
</xsl:choose>
|
||||||
|
</td>
|
||||||
|
<td>
|
||||||
|
<xsl:choose>
|
||||||
|
<xsl:when test="string-length(@sim_year)>0">
|
||||||
|
<xsl:value-of select="@sim_year"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:otherwise>
|
||||||
|
All yrs
|
||||||
|
</xsl:otherwise>
|
||||||
|
</xsl:choose>
|
||||||
|
</td>
|
||||||
|
<td>
|
||||||
|
<xsl:choose>
|
||||||
|
<xsl:when test="string-length(@sim_year_range)>0">
|
||||||
|
<xsl:value-of select="@sim_year_range"/>
|
||||||
|
</xsl:when>
|
||||||
|
<xsl:otherwise>
|
||||||
|
All sim-yr-rng
|
||||||
|
</xsl:otherwise>
|
||||||
|
</xsl:choose>
|
||||||
|
</td>
|
||||||
|
<td>
|
||||||
|
<xsl:if test="string-length(@bgc)>0">
|
||||||
|
bgc=<xsl:value-of select="@bgc"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@ic_ymd)>0">
|
||||||
|
ymd=<xsl:value-of select="@ic_ymd"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@ic_tod)>0">
|
||||||
|
tod=<xsl:value-of select="@ic_tod"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@maxpft)>0">
|
||||||
|
maxpft=<xsl:value-of select="@maxpft"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@glc_nec)>0">
|
||||||
|
glc_nec=<xsl:value-of select="@glc_nec"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@sitespf_pt)>0">
|
||||||
|
sitespf_pt=<xsl:value-of select="@sitespf_pt"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@datm_presaero)>0">
|
||||||
|
datm_presaero=<xsl:value-of select="@datm_presaero"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@crop)>0">
|
||||||
|
crop=<xsl:value-of select="@crop"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@spinup)>0">
|
||||||
|
spinup=<xsl:value-of select="@spinup"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@source)>0">
|
||||||
|
forcing=<xsl:value-of select="@source"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@rcp)>0">
|
||||||
|
rcp=<xsl:value-of select="@rcp"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@ngwh)>0">
|
||||||
|
newwoodharv=<xsl:value-of select="@ngwh"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@type)>0">
|
||||||
|
type=<xsl:value-of select="@type"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@to_hgrid)>0">
|
||||||
|
to_hgrid=<xsl:value-of select="@to_hgrid"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@to_lmask)>0">
|
||||||
|
to_lmask=<xsl:value-of select="@to_lmask"/>
|
||||||
|
</xsl:if>
|
||||||
|
<xsl:if test="string-length(@hires)>0">
|
||||||
|
hires=<xsl:value-of select="@hires"/>
|
||||||
|
</xsl:if>
|
||||||
|
</td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td colspan="5"><b>Value: </b><xsl:value-of select="." /></td>
|
||||||
|
</tr>
|
||||||
|
</xsl:for-each>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
</body>
|
||||||
|
|
||||||
|
</html>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
</xsl:stylesheet>
|
||||||
2122
bld/namelist_files/namelist_defaults_ctsm.xml
Normal file
2122
bld/namelist_files/namelist_defaults_ctsm.xml
Normal file
File diff suppressed because it is too large
Load Diff
9
bld/namelist_files/namelist_defaults_drv.xml
Normal file
9
bld/namelist_files/namelist_defaults_drv.xml
Normal file
@ -0,0 +1,9 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="namelist_defaults.xsl"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<drv_flds_in_files>Buildconf/camconf/drv_flds_in,Buildconf/clmconf/drv_flds_in</drv_flds_in_files>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
33
bld/namelist_files/namelist_defaults_drydep.xml
Normal file
33
bld/namelist_files/namelist_defaults_drydep.xml
Normal file
@ -0,0 +1,33 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="namelist_defaults.xsl"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
Values to use by default for creation of CLM model driver namelists.
|
||||||
|
The element names are the same as the corresponding namelist
|
||||||
|
variables. Values that depend on the model configuration use
|
||||||
|
attributes to express the dependency. The recognized attributes
|
||||||
|
are: RESOLUTION, defaults, mask, ic_ymd, ic_tod, sim_year and all configuration
|
||||||
|
attributes from the config_cache.xml file (with keys converted to upper-case).
|
||||||
|
-->
|
||||||
|
|
||||||
|
<!-- Defaults for drydep_inparm namelist -->
|
||||||
|
|
||||||
|
<drydep_list>'O3','NO2','HNO3','NO','HO2NO2','CH3OOH','CH2O','CO','H2O2','CH3COOOH','PAN','MPAN','C2H5OOH','ONIT','POOH','C3H7OOH','ROOH','CH3COCHO','CH3COCH3','Pb','ONITR','MACROOH','XOOH','ISOPOOH','CH3OH','C2H5OH','CH3CHO','GLYALD','HYAC','HYDRALD','ALKOOH','MEKOOH','TOLOOH','TERPOOH','CH3COOH','CB1','CB2','OC1','OC2','SOA','SO2','SO4','NH3','NH4NO3'
|
||||||
|
</drydep_list>
|
||||||
|
|
||||||
|
<!-- effective Henry's coef data for wet and dry deposition -->
|
||||||
|
<dep_data_file>atm/cam/chem/trop_mozart/dvel/dep_data_c201019.nc</dep_data_file>
|
||||||
|
|
||||||
|
<!-- Defaults for megan_emis_nl -->
|
||||||
|
|
||||||
|
<megan_specifier>'ISOP = isoprene', 'C10H16 = pinene_a + carene_3 + thujene_a', 'CH3OH = methanol', 'C2H5OH = ethanol', 'CH2O = formaldehyde', 'CH3CHO = acetaldehyde', 'CH3COOH = acetic_acid', 'CH3COCH3 = acetone'</megan_specifier>
|
||||||
|
|
||||||
|
<megan_factors_file phys="clm6_0" >atm/cam/chem/trop_mozart/emis/megan21_emis_factors_78pft_c20161108.nc</megan_factors_file>
|
||||||
|
<megan_factors_file phys="clm5_1" >atm/cam/chem/trop_mozart/emis/megan21_emis_factors_78pft_c20161108.nc</megan_factors_file>
|
||||||
|
<megan_factors_file phys="clm5_0" >atm/cam/chem/trop_mozart/emis/megan21_emis_factors_78pft_c20161108.nc</megan_factors_file>
|
||||||
|
<megan_factors_file phys="clm4_5" >atm/cam/chem/trop_mozart/emis/megan21_emis_factors_78pft_c20161108.nc</megan_factors_file>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
22
bld/namelist_files/namelist_defaults_fire_emis.xml
Normal file
22
bld/namelist_files/namelist_defaults_fire_emis.xml
Normal file
@ -0,0 +1,22 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="namelist_defaults.xsl"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
Values to use by default for creation of CLM model driver namelists.
|
||||||
|
The element names are the same as the corresponding namelist
|
||||||
|
variables. Values that depend on the model configuration use
|
||||||
|
attributes to express the dependency. The recognized attributes
|
||||||
|
are: RESOLUTION, defaults, mask, ic_ymd, ic_tod, sim_year and all configuration
|
||||||
|
attributes from the config_cache.xml file (with keys converted to upper-case).
|
||||||
|
-->
|
||||||
|
|
||||||
|
<!-- Defaults for fire_emis_nl namelist -->
|
||||||
|
|
||||||
|
<fire_emis_specifier>'bc_a1 = BC','pom_a1 = 1.4*OC','SO2 = SO2'</fire_emis_specifier>
|
||||||
|
|
||||||
|
<fire_emis_factors_file>lnd/clm2/firedata/fire_emis_factors_c140116.nc</fire_emis_factors_file>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
125
bld/namelist_files/namelist_defaults_overall.xml
Normal file
125
bld/namelist_files/namelist_defaults_overall.xml
Normal file
@ -0,0 +1,125 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="namelist_defaults.xsl"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
Values to use by default for creation of CLM model namelists.
|
||||||
|
These are overall settings used as defaults for the model
|
||||||
|
configuration of all namelists. None of these are items
|
||||||
|
in a namelist, but they are default values that will help
|
||||||
|
determine default values for namelists.
|
||||||
|
-->
|
||||||
|
|
||||||
|
<!--
|
||||||
|
|
||||||
|
Default CLM start-type
|
||||||
|
|
||||||
|
NOTE: For clm_start_type of "startup" these need to be carefully coordinated with
|
||||||
|
the settings for use_init_interp, init_interp_attributes and finidat in
|
||||||
|
namelist_defaults_ctsm.xml.
|
||||||
|
|
||||||
|
-->
|
||||||
|
|
||||||
|
<clm_start_type >arb_ic</clm_start_type>
|
||||||
|
<clm_start_type bgc_spinup="on" >cold</clm_start_type>
|
||||||
|
<clm_start_type use_cndv=".true." >cold</clm_start_type>
|
||||||
|
<clm_start_type use_fates=".true.">cold</clm_start_type>
|
||||||
|
<clm_start_type sim_year="1850" >startup</clm_start_type>
|
||||||
|
<clm_start_type sim_year="2000" >startup</clm_start_type>
|
||||||
|
|
||||||
|
<!-- CAM4 and CAM5 tuning are all cold starts -->
|
||||||
|
<clm_start_type phys="clm4_5" lnd_tuning_mode="clm4_5_cam5.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm4_5" lnd_tuning_mode="clm4_5_cam4.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm5_0" lnd_tuning_mode="clm5_0_cam5.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm5_0" lnd_tuning_mode="clm5_0_cam4.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm5_1" lnd_tuning_mode="clm5_1_cam5.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm5_1" lnd_tuning_mode="clm5_1_cam4.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm6_0" lnd_tuning_mode="clm6_0_cam5.0" >cold</clm_start_type>
|
||||||
|
<clm_start_type phys="clm6_0" lnd_tuning_mode="clm6_0_cam4.0" >cold</clm_start_type>
|
||||||
|
|
||||||
|
<clm_start_type sim_year_range="1850-2100">arb_ic</clm_start_type>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- For transient cases, turn on demand to set flanduse_timeseries -->
|
||||||
|
<clm_demand sim_year_range="1850-2100" neon=".true." >null</clm_demand> <!-- NEON sites don't have transient PFT datasets yet -->
|
||||||
|
<clm_demand sim_year_range="constant" >null</clm_demand>
|
||||||
|
<clm_demand sim_year_range="1850-2000" >flanduse_timeseries</clm_demand>
|
||||||
|
<clm_demand sim_year_range="1850-2100" >flanduse_timeseries</clm_demand>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- Default location of {csmdata} -->
|
||||||
|
<csmdata>/fs/cgd/csm/inputdata</csmdata>
|
||||||
|
|
||||||
|
<!-- Default resolution -->
|
||||||
|
<res sitespf_pt="none" >1.9x2.5</res>
|
||||||
|
<res sitespf_pt="1x1_brazil" >1x1_brazil</res>
|
||||||
|
<res sitespf_pt="5x5_amazon" >5x5_amazon</res>
|
||||||
|
<res sitespf_pt="1x1_vancouverCAN" >1x1_vancouverCAN</res>
|
||||||
|
<res sitespf_pt="1x1_mexicocityMEX" >1x1_mexicocityMEX</res>
|
||||||
|
<res sitespf_pt="1x1_asphaltjungleNJ">1x1_asphaltjungleNJ</res>
|
||||||
|
<res sitespf_pt="1x1_urbanc_alpha" >1x1_urbanc_alpha</res>
|
||||||
|
<res sitespf_pt="1x1_numaIA" >1x1_numaIA</res>
|
||||||
|
<res sitespf_pt="1x1_smallvilleIA" >1x1_smallvilleIA</res>
|
||||||
|
|
||||||
|
<!-- Default simulation year -->
|
||||||
|
<sim_year>2000</sim_year>
|
||||||
|
|
||||||
|
<!-- Default simulation year range -->
|
||||||
|
<sim_year_range>constant</sim_year_range>
|
||||||
|
|
||||||
|
<!-- Check resolution and land/mask in the local resolution list before continuing - normally turned off -->
|
||||||
|
<chk_res>0</chk_res>
|
||||||
|
|
||||||
|
<!-- Add note to namelist files documenting the options given to build-namelist -->
|
||||||
|
<note mode="clm_stndln" >1</note>
|
||||||
|
<note mode="ext_cesm" >0</note>
|
||||||
|
|
||||||
|
<!-- Default Shared Socioeconomic Pathway and representative concentration pathway for future scenarios -->
|
||||||
|
<ssp_rcp>hist</ssp_rcp>
|
||||||
|
|
||||||
|
<!-- Default land/ocean mask type -->
|
||||||
|
<mask hgrid="0.23x0.31" >gx1v6</mask>
|
||||||
|
<mask hgrid="0.47x0.63" >gx1v6</mask>
|
||||||
|
<mask hgrid="0.9x1.25" >gx1v7</mask>
|
||||||
|
<mask hgrid="1.9x2.5" >gx1v7</mask>
|
||||||
|
<mask hgrid="2.5x3.33" >gx3v7</mask>
|
||||||
|
<mask hgrid="4x5" >gx3v7</mask>
|
||||||
|
<mask hgrid="10x15" >gx3v7</mask>
|
||||||
|
|
||||||
|
<mask hgrid="360x720cru" >cruncep</mask>
|
||||||
|
<mask hgrid="128x256" >gx1v7</mask>
|
||||||
|
<mask hgrid="64x128" >gx1v7</mask>
|
||||||
|
<mask hgrid="48x96" >gx3v7</mask>
|
||||||
|
<mask hgrid="32x64" >gx3v7</mask>
|
||||||
|
<mask hgrid="8x16" >gx3v7</mask>
|
||||||
|
|
||||||
|
<mask hgrid="94x192" >T62</mask>
|
||||||
|
|
||||||
|
<mask hgrid="ne120" >gx1v6</mask>
|
||||||
|
<mask hgrid="ne240" >gx1v6</mask>
|
||||||
|
<mask hgrid="ne30" >gx1v6</mask>
|
||||||
|
|
||||||
|
<mask hgrid="0.125nldas2" >nldas2</mask>
|
||||||
|
<mask hgrid="5x5_amazon" >navy</mask>
|
||||||
|
<mask hgrid="1x1_vancouverCAN" >navy</mask>
|
||||||
|
<mask hgrid="1x1_mexicocityMEX" >navy</mask>
|
||||||
|
<mask hgrid="1x1_asphaltjungleNJ" >navy</mask>
|
||||||
|
<mask hgrid="1x1_brazil" >navy</mask>
|
||||||
|
<mask hgrid="1x1_urbanc_alpha" >test</mask>
|
||||||
|
<mask hgrid="1x1_numaIA" >navy</mask>
|
||||||
|
<mask hgrid="1x1_smallvilleIA" >test</mask>
|
||||||
|
<mask >gx1v7</mask>
|
||||||
|
|
||||||
|
<!-- Default glacier model options -->
|
||||||
|
|
||||||
|
<glc_dyntopo >.false.</glc_dyntopo>
|
||||||
|
<glc_nec glc_nec="0" >0</glc_nec>
|
||||||
|
<glc_nec glc_nec="1" >1</glc_nec>
|
||||||
|
<glc_nec glc_nec="3" >3</glc_nec>
|
||||||
|
<glc_nec glc_nec="5" >5</glc_nec>
|
||||||
|
<glc_nec glc_nec="10">10</glc_nec>
|
||||||
|
<glc_nec glc_nec="36">36</glc_nec>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
36
bld/namelist_files/namelist_defaults_usr_files.xml
Normal file
36
bld/namelist_files/namelist_defaults_usr_files.xml
Normal file
@ -0,0 +1,36 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="namelist_defaults.xsl"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
User defined filenames to use in conjuction with the "clm_usr_name" option
|
||||||
|
to build-namelist to specify user created files that will be searched for
|
||||||
|
in place of the standard files, or to give different resolutions, or
|
||||||
|
The element names are the same as the corresponding namelist filename
|
||||||
|
variables (only files can be set here). Values that depend on the model
|
||||||
|
configuration use attributes to express the dependency. The recognized attributes
|
||||||
|
are: clm_usr_name, mask, sim_year, and sim_year_range and all configuration
|
||||||
|
attributes from the config_cache.xml file (with keys converted to upper-case).
|
||||||
|
|
||||||
|
In addition variable names expressed as ${variable_name} will be expanded
|
||||||
|
provided they are in the valid list expressed above.
|
||||||
|
-->
|
||||||
|
|
||||||
|
<!-- Initial file (relative to ${csmdata}) -->
|
||||||
|
|
||||||
|
<finidat >lnd/clm2/initdata/clmi.${clm_usr_name}_${mask}_simyr${sim_year}.nc</finidat>
|
||||||
|
|
||||||
|
<!-- Surface dataset (relative to ${csmdata}) -->
|
||||||
|
<fsurdat phys="clm4_0">lnd/clm2/surfdata/surfdata_${clm_usr_name}_simyr${sim_year}.nc</fsurdat>
|
||||||
|
<fsurdat phys="clm4_5">lnd/clm2/surfdata_map/surfdata_${clm_usr_name}_simyr${sim_year}.nc</fsurdat>
|
||||||
|
|
||||||
|
<!-- Dynamic PFT surface dataset (relative to ${csmdata}) -->
|
||||||
|
<flanduse_timeseries sim_year_range="constant" ssp_rcp="hist">null</flanduse_timeseries>
|
||||||
|
<flanduse_timeseries ssp_rcp="hist">lnd/clm2/surfdata/landuse.timeseries_${clm_usr_name}_simyr${sim_year_range}.nc</flanduse_timeseries>
|
||||||
|
<flanduse_timeseries sim_year_range="1850-2000" ssp_rcp="hist">lnd/clm2/surfdata/landuse.timeseries_${clm_usr_name}_simyr1849-2006.nc</flanduse_timeseries>
|
||||||
|
<flanduse_timeseries >lnd/clm2/surfdata/landuse.timeseries_${ssp_rcp}_${clm_usr_name}_simyr${sim_year_range}.nc</flanduse_timeseries>
|
||||||
|
<flanduse_timeseries sim_year_range="1850-2000" >lnd/clm2/surfdata/landuse.timeseries_${ssp_rcp}_${clm_usr_name}_simyr1849-2006.nc</flanduse_timeseries>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
340
bld/namelist_files/namelist_definition.xsl
Normal file
340
bld/namelist_files/namelist_definition.xsl
Normal file
@ -0,0 +1,340 @@
|
|||||||
|
<?xml version='1.0'?>
|
||||||
|
|
||||||
|
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
|
||||||
|
|
||||||
|
<xsl:template match="/">
|
||||||
|
<html>
|
||||||
|
<xsl:apply-templates/>
|
||||||
|
</html>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
<xsl:template match="namelist_definition">
|
||||||
|
<head>
|
||||||
|
<title>CLM Namelist Definition</title>
|
||||||
|
</head>
|
||||||
|
<body>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<hr/>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<h1>Definition of CLM namelist variables</h1>
|
||||||
|
<p>We list all of the relevant namelist variables for CLM I cases. This includes
|
||||||
|
CLM Namelist items as well as CLM build-namelist settings and namelist settings
|
||||||
|
for CLM offline tools.</p>
|
||||||
|
<hr/>
|
||||||
|
<h2>Definition of CLM namelist variables</h2>
|
||||||
|
<p>Note, these all would go into the user_nl_clm file
|
||||||
|
before configure):</p>
|
||||||
|
<p>Included in the table are the following pieces of information:</p>
|
||||||
|
<ul>
|
||||||
|
<li>Variable name.</li>
|
||||||
|
<li>Variable type (<code>char</code>, <code>integer</code>,
|
||||||
|
<code>real</code>, or <code>logical</code>). The type
|
||||||
|
<code>char</code> has the length appended
|
||||||
|
following an asterisk, e.g., <code>char*256</code>. Variables that are
|
||||||
|
arrays have their dimension specifier appended inside parentheses. For
|
||||||
|
example <code>char*1(6)</code> denotes a array of six
|
||||||
|
<code>char*1</code> values.
|
||||||
|
</li>
|
||||||
|
<li>Variable description (includes information on defaults).</li>
|
||||||
|
<li>Valid values (if restricted).</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Physics Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_physics']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Lake Model Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_lake']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Biogeochemistry (BGC) Model Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='bgc']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Biogeochemistry Namelist Nitrogen Model Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_nitrogen']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Methane Model Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_methane']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Vertical CN Model Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_vertcn']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Carbon Isotope Model Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_isotope']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Datasets</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description
|
||||||
|
</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='datasets']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist History output settings</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='history']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Restart settings</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_restart']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Performance Tuning</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='clm_performance']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<hr/>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<h2>Command Line Options to CLM Build-namelist</h2>
|
||||||
|
<p>Variables that are entered as options to build-namelist (but NOT used by
|
||||||
|
namelists in code). Most of these are options that could be added to
|
||||||
|
CLM_BLDNML_OPTS. Included in the table are the following pieces
|
||||||
|
of information:</p>
|
||||||
|
<ul>
|
||||||
|
<li>Variable name.</li>
|
||||||
|
<li>Type.</li>
|
||||||
|
<li>Valid values.</li>
|
||||||
|
<li>Variable description.</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Default Settings</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values, if restricted at all</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='default_settings']"/>
|
||||||
|
</table>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<hr/>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<h2>Command Line Options to CLM Build-namelist</h2>
|
||||||
|
<p>Variables that are entered as options to build-namelist (but NOT used by
|
||||||
|
namelists in code). Most of these are options that could be added to
|
||||||
|
CLM_BLDNML_OPTS. Included in the table are the following pieces
|
||||||
|
of information:</p>
|
||||||
|
<ul>
|
||||||
|
<li>Variable name.</li>
|
||||||
|
<li>Type.</li>
|
||||||
|
<li>Valid values.</li>
|
||||||
|
<li>Variable description.</li>
|
||||||
|
</ul>
|
||||||
|
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM Namelist Default Settings</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values, if restricted at all</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='default_settings']"/>
|
||||||
|
</table>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<hr/>
|
||||||
|
<p>
|
||||||
|
</p>
|
||||||
|
<h2>Namelist items for CLM Tools</h2>
|
||||||
|
<p>These are namelist items that appear in the CLM Tools under components/clm/tools.
|
||||||
|
</p>
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM mkgriddata</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='mkgriddata']"/>
|
||||||
|
</table>
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>CLM mkgriddata</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='mkgriddata']"/>
|
||||||
|
</table>
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>Miscellaneous CLM tools</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='tools']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<hr/>
|
||||||
|
|
||||||
|
<h2>Namelist items for Driver MEGAN Physics</h2>
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>Driver Physics</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='drv_physics']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
|
||||||
|
<h2>Namelist items for Driver Dry Deposition</h2>
|
||||||
|
<table border="1" cellpadding="10">
|
||||||
|
<caption>Driver Dry-Deposition Namelist Options</caption>
|
||||||
|
<tr>
|
||||||
|
<th rowspan="2">Name</th>
|
||||||
|
<th rowspan="2">Type</th>
|
||||||
|
<th>Description</th>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<th colspan="1">Valid values, if restricted at all</th>
|
||||||
|
</tr>
|
||||||
|
<xsl:apply-templates select="entry[@category='dry-deposition']"/>
|
||||||
|
</table>
|
||||||
|
|
||||||
|
<hr/>
|
||||||
|
|
||||||
|
</body>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
<xsl:template match="entry">
|
||||||
|
<tr>
|
||||||
|
<td rowspan="2"><font color="#ff0000"><xsl:value-of select="@id"/></font></td>
|
||||||
|
<td rowspan="2"><xsl:value-of select="@type"/></td>
|
||||||
|
<td><xsl:apply-templates/></td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td colspan="1"><xsl:if test="string-length(@valid_values)>0"><b>Valid Values: </b>
|
||||||
|
<xsl:value-of select="@valid_values"/></xsl:if></td>
|
||||||
|
</tr>
|
||||||
|
</xsl:template>
|
||||||
|
|
||||||
|
</xsl:stylesheet>
|
||||||
2866
bld/namelist_files/namelist_definition_ctsm.xml
Normal file
2866
bld/namelist_files/namelist_definition_ctsm.xml
Normal file
File diff suppressed because it is too large
Load Diff
17
bld/namelist_files/namelist_definition_drv.xml
Normal file
17
bld/namelist_files/namelist_definition_drv.xml
Normal file
@ -0,0 +1,17 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_definition>
|
||||||
|
|
||||||
|
<version>1.0</version>
|
||||||
|
|
||||||
|
<!-- The following entries are being used by CLM's build-namelist,
|
||||||
|
which has not been converted to parse the version 2.0 schema for
|
||||||
|
a namelist_definition.xml file
|
||||||
|
-->
|
||||||
|
|
||||||
|
<entry id="start_type" type="char*64" category="expdef" group="seq_infodata_inparm" valid_values="startup,branch,continue"> </entry>
|
||||||
|
<entry id="start_ymd" type="integer" category="time" group="seq_timemgr_inparm"> </entry>
|
||||||
|
<entry id="glc_nec" type="integer" category="seq_flds" group="seq_cplflds_inparm"> </entry>
|
||||||
|
|
||||||
|
</namelist_definition>
|
||||||
|
|
||||||
126
bld/namelist_files/namelist_definition_drv_flds.xml
Normal file
126
bld/namelist_files/namelist_definition_drv_flds.xml
Normal file
@ -0,0 +1,126 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="namelist_definition.xsl"?>
|
||||||
|
|
||||||
|
<namelist_definition version="1.0">
|
||||||
|
|
||||||
|
<entry id="drv_flds_in_files"
|
||||||
|
type="char*256(10)"
|
||||||
|
category="drv_physics"
|
||||||
|
group="default_settings"
|
||||||
|
valid_values="" >
|
||||||
|
List of files to merge together that contains drv_flds_in namelists
|
||||||
|
The paths are relative to the case directory. drv_flds_in include the namelists that
|
||||||
|
the driver reads and gives information on additional fields to be passed to different
|
||||||
|
components that need to look at the same data.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
<!-- MEGAN VOC emissions namelist options -->
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
|
||||||
|
<entry id="megan_factors_file"
|
||||||
|
type="char*256"
|
||||||
|
input_pathname="abs"
|
||||||
|
category="drv_physics"
|
||||||
|
group="megan_emis_nl"
|
||||||
|
valid_values="" >
|
||||||
|
File containing MEGAN emissions factors. Includes the list of MEGAN compounds that can be
|
||||||
|
used in the Comp_Name variable on the file.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="megan_specifier"
|
||||||
|
type="char*1024(100)"
|
||||||
|
category="drv_physics"
|
||||||
|
group="megan_emis_nl"
|
||||||
|
valid_values="" >
|
||||||
|
MEGAN specifier. This is in the form of: Chem-compound = megan_compound(s)
|
||||||
|
where megan_compound(s) can be the sum of megan compounds with a "+" between them.
|
||||||
|
In each equation, the item to the left of the equal sign is a CAM chemistry compound, the
|
||||||
|
items to the right are compounds known to the MEGAN model (single or combinations).
|
||||||
|
For example: megan_specifier = 'ISOP = isoprene', 'C10H16 = pinene_a + carene_3 + thujene_a'
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="megan_mapped_emisfctrs"
|
||||||
|
type="logical"
|
||||||
|
category="drv_physics"
|
||||||
|
group="megan_emis_nl" >
|
||||||
|
MEGAN mapped isoprene emissions factors switch
|
||||||
|
If TRUE then use mapped MEGAN emissions factors for isoprene.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="megan_cmpds"
|
||||||
|
type="char*32(150)"
|
||||||
|
category="drv_physics"
|
||||||
|
group="drv_physics"
|
||||||
|
valid_values=
|
||||||
|
"isoprene,myrcene,sabinene,limonene,carene_3,ocimene_t_b,pinene_b,pinene_a,2met_styrene,cymene_p,cymene_o,phellandrene_a,thujene_a,terpinene_a,terpinene_g,terpinolene,phellandrene_b,camphene,bornene,fenchene_a,ocimene_al,ocimene_c_b,tricyclene,estragole,camphor,fenchone,piperitone,thujone_a,thujone_b,cineole_1_8,borneol,linalool,terpineol_4,terpineol_a,linalool_OXD_c,linalool_OXD_t,ionone_b,bornyl_ACT,farnescene_a,caryophyllene_b,acoradiene,aromadendrene,bergamotene_a,bergamotene_b,bisabolene_a,bisabolene_b,bourbonene_b,cadinene_d,cadinene_g,cedrene_a,copaene_a,cubebene_a,cubebene_b,elemene_b,farnescene_b,germacrene_B,germacrene_D,gurjunene_b,humulene_a,humulene_g,isolongifolene,longifolene,longipinene,muurolene_a,muurolene_g,selinene_b,selinene_d,nerolidol_c,nerolidol_t,cedrol,MBO_2m3e2ol,methanol,acetone,methane,ammonia,nitrous_OXD,nitric_OXD,acetaldehyde,ethanol,formic_acid,formaldehyde,acetic_acid,MBO_3m2e1ol,MBO_3m3e1ol,benzaldehyde,butanone_2,decanal,dodecene_1,geranyl_acetone,heptanal,heptane,hexane,met_benzoate,met_heptenone,neryl_acetone,nonanal,nonenal,octanal,octanol,octenol_1e3ol,oxopentanal,pentane,phenyl_CCO,pyruvic_acid,terpinyl_ACT_a,tetradecene_1,toluene,carbon_monoxide,butene,ethane,ethene,hydrogen_cyanide,propane,propene,carbon_2s,carbonyl_s,diallyl_2s,2met_2s,2met_s,met_chloride,met_bromide,met_iodide,hydrogen_s,met_mercaptan,met_propenyl_2s,PPPP_2s,2met_nonatriene,met_salicylate,indole,jasmone,met_jasmonate,3met_3DCTT,hexanal,hexanol_1,hexenal_c3,hexenal_t2,hexenol_c3,hexenyl_ACT_c3,homosalate,Ehsalate,pentanal,heptanone,anisole,verbenene,benzyl-acetate,myrtenal,benzyl-alcohol,meta-cymenene,ipsenol,Napthalene">
|
||||||
|
List of possible MEGAN compounds to use
|
||||||
|
(the list used by the simulation is on the megan_factors_file as the Comp_Name)
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
<!-- drydep Namelists -->
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
|
||||||
|
<entry id="drydep_list"
|
||||||
|
type="char*32(300)"
|
||||||
|
category="dry-deposition"
|
||||||
|
group="drydep_inparm"
|
||||||
|
valid_values="">
|
||||||
|
List of species that undergo dry deposition.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="dep_data_file"
|
||||||
|
type="char*500"
|
||||||
|
input_pathname="abs"
|
||||||
|
category="dry_deposition"
|
||||||
|
group="drydep_inparm"
|
||||||
|
valid_values="" >
|
||||||
|
Full pathname of file containing gas phase deposition data including effective
|
||||||
|
Henry's law coefficients.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
<!-- Fire emissions fluxes -->
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
|
||||||
|
<entry id="fire_emis_factors_file"
|
||||||
|
type="char*256"
|
||||||
|
input_pathname="abs"
|
||||||
|
category="Fire_emissions"
|
||||||
|
group="fire_emis_nl"
|
||||||
|
valid_values="" >
|
||||||
|
File containing fire emissions factors.
|
||||||
|
Default: none
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="fire_emis_specifier"
|
||||||
|
type="char*1024(100)"
|
||||||
|
category="Fire_emissions"
|
||||||
|
group="fire_emis_nl"
|
||||||
|
valid_values="" >
|
||||||
|
Fire emissions specifier.
|
||||||
|
Default: none
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="fire_emis_elevated"
|
||||||
|
type="logical"
|
||||||
|
category="Fire_emissions"
|
||||||
|
group="fire_emis_nl"
|
||||||
|
valid_values="" >
|
||||||
|
If true fire emissions are input into atmosphere as elevated forcings.
|
||||||
|
Otherwise they are treated as surface emissions.
|
||||||
|
Default: TRUE
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
<!-- CARMA fields -->
|
||||||
|
<!-- ======================================================================================== -->
|
||||||
|
|
||||||
|
<entry id="carma_fields" type="char*256" category="carma"
|
||||||
|
group="carma_inparm" valid_values="" >
|
||||||
|
List of fluxes needed by the CARMA model, from CLM to CAM.
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
</namelist_definition>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP1-1.9 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP1-1.9 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP1-1.9</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP1-2.6 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP1-2.6 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP1-2.6</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP2-4.5 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP2-4.5 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP2-4.5</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP3-7.0 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP3-7.0 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP3-7.0</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP4-3.4 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP4-3.4 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP4-3.4</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP4-6.0 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP4-6.0 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP4-6.0</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP5-3.4 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP5-3.4 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP5-3.4</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
@ -0,0 +1,21 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP5-8.5 scenario</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to current day with historical data, and then to 2100 with the CMIP6 SSP5-8.5 scenario</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<ssp_rcp>SSP5-8.5</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
54
bld/namelist_files/use_cases/1850_control.xml
Normal file
54
bld/namelist_files/use_cases/1850_control.xml
Normal file
@ -0,0 +1,54 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc>Conditions to simulate 1850 land-use</use_case_desc>
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>constant</sim_year_range>
|
||||||
|
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1">.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm4_5" >.false.</irrigate>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_5" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_5" use_cn=".true." >1850</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_0" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_0" use_cn=".true." >1850</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_1" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_1" use_cn=".true." >1850</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm4_5" cnfireson=".true." >1850</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm4_5" cnfireson=".true." >1850</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_0" cnfireson=".true." >1850</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_0" cnfireson=".true." >1850</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_1" cnfireson=".true." >1850</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_1" cnfireson=".true." >1850</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm4_5" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm4_5" >1850</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_0" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_0" >1850</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_1" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_1" >1850</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_fldfilename_ndep phys="clm5_1" use_cn=".true."
|
||||||
|
>lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</stream_fldfilename_ndep>
|
||||||
|
|
||||||
|
<stream_fldfilename_ndep phys="clm5_0" use_cn=".true."
|
||||||
|
>lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</stream_fldfilename_ndep>
|
||||||
|
|
||||||
|
<stream_fldfilename_ndep phys="clm4_5" use_cn=".true."
|
||||||
|
>lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</stream_fldfilename_ndep>
|
||||||
|
|
||||||
|
<ndep_taxmode phys="clm5_0" use_cn=".true." >cycle</ndep_taxmode>
|
||||||
|
<ndep_taxmode phys="clm5_1" use_cn=".true." >cycle</ndep_taxmode>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
60
bld/namelist_files/use_cases/1850_noanthro_control.xml
Normal file
60
bld/namelist_files/use_cases/1850_noanthro_control.xml
Normal file
@ -0,0 +1,60 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc>Simulate current conditions without ANY anthropogenic influnces</use_case_desc>
|
||||||
|
|
||||||
|
<sim_year>PtVg</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>constant</sim_year_range>
|
||||||
|
|
||||||
|
<irrigate>.false.</irrigate>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_5" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_5" use_cn=".true." >1850</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_0" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_0" use_cn=".true." >1850</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_1" use_cn=".true.">1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_1" use_cn=".true.">1850</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<ndep_taxmode phys="clm5_0" use_cn=".true." >cycle</ndep_taxmode>
|
||||||
|
<ndep_taxmode phys="clm5_1" use_cn=".true." >cycle</ndep_taxmode>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm4_5" cnfireson=".true." >1925</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm4_5" cnfireson=".true." >1925</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_0" cnfireson=".true." >1925</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_0" cnfireson=".true." >1925</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_1" cnfireson=".true.">1925</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_1" cnfireson=".true.">1925</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<!-- zero population density file -->
|
||||||
|
<stream_fldfilename_popdens hgrid="0.5x0.5" use_cn=".true."
|
||||||
|
>lnd/clm2/firedata/clmforc.no_anthro_zero_hdm_1x1_simyr1925_181113.nc</stream_fldfilename_popdens>
|
||||||
|
<stream_meshfile_popdens hgrid="0.5x0.5" use_cn=".true.">none</stream_meshfile_popdens>
|
||||||
|
<popdensmapalgo use_cn=".true.">nn</popdensmapalgo>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_1" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_1" >1850</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_0" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_0" >1850</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm4_5" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm4_5" >1850</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<!-- Turn calculation of human stress indices all the way off to save some CPU -->
|
||||||
|
<calc_human_stress_indices >NONE</calc_human_stress_indices>
|
||||||
|
|
||||||
|
<!-- Turn off URBAN heating and A/C, and turn off harvesting of forests -->
|
||||||
|
<urban_hac >OFF</urban_hac>
|
||||||
|
<do_harvest >.false.</do_harvest>
|
||||||
|
|
||||||
|
<!-- Set contants having to do with fire due to human influences to zero (human ignition counts, and crop fires -->
|
||||||
|
<pot_hmn_ign_counts_alpha use_cn=".true.">0.0</pot_hmn_ign_counts_alpha>
|
||||||
|
<cropfire_a1 use_cn=".true.">0.0</cropfire_a1>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
44
bld/namelist_files/use_cases/2000_control.xml
Normal file
44
bld/namelist_files/use_cases/2000_control.xml
Normal file
@ -0,0 +1,44 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc>Conditions to simulate 2000 land-use</use_case_desc>
|
||||||
|
|
||||||
|
<sim_year>2000</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>constant</sim_year_range>
|
||||||
|
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".false." >.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm4_5" >.false.</irrigate>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_5" use_cn=".true." >2000</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_5" use_cn=".true." >2000</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_0" use_cn=".true." >2000</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_0" use_cn=".true." >2000</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_1" use_cn=".true.">2000</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_1" use_cn=".true.">2000</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm4_5" cnfireson=".true." >2000</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm4_5" cnfireson=".true." >2000</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_0" cnfireson=".true." >2000</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_0" cnfireson=".true." >2000</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_1" cnfireson=".true.">2000</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_1" cnfireson=".true.">2000</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm4_5" >2000</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm4_5" >2000</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_0" >2000</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_0" >2000</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_1" >2000</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_1" >2000</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
51
bld/namelist_files/use_cases/2010_control.xml
Normal file
51
bld/namelist_files/use_cases/2010_control.xml
Normal file
@ -0,0 +1,51 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc>Conditions to simulate 2010 land-use</use_case_desc>
|
||||||
|
|
||||||
|
<sim_year>2000</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>constant</sim_year_range>
|
||||||
|
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm4_5" >.false.</irrigate>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_0" bgc="cn" >2010</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_0" bgc="cn" >2010</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_0" bgc="cndv" >2010</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_0" bgc="cndv" >2010</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_5" use_cn=".true." >2010</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_5" use_cn=".true." >2010</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_0" use_cn=".true." >2010</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_0" use_cn=".true." >2010</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_1" use_cn=".true." >2010</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_1" use_cn=".true." >2010</stream_year_last_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm4_5" cnfireson=".true." >2010</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm4_5" cnfireson=".true." >2010</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_0" cnfireson=".true." >2010</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_0" cnfireson=".true." >2010</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_1" cnfireson=".true." >2010</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_1" cnfireson=".true." >2010</stream_year_last_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_1" >2010</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_1" >2010</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_0" >2010</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_0" >2010</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm4_5" >2010</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm4_5" >2010</stream_year_last_urbantv>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
33
bld/namelist_files/use_cases/2018-PD_transient.xml
Normal file
33
bld/namelist_files/use_cases/2018-PD_transient.xml
Normal file
@ -0,0 +1,33 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<!-- This use-case is mainly in use for NEON sites -->
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc use_cn=".true.">Simulate transient Nitrogen-deposition, aerosol deposition, urban, and fire related (pop-density, lightning) changes from 2018 to current day with a mix of historical data, and future scenario data</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".false." use_fates=".true.">Simulate transient Nitrogen-deposition, aerosol deposition, urban, and fire related (pop-density, lightning) changes from 2018 to current day with a mix of historical data, and future scenario data</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".false." use_fates=".false.">Simulate transient urban and aerosol deposition changes from 2018 to current day with a mix of historical data, and future scenario data</use_case_desc>
|
||||||
|
|
||||||
|
<!-- Have a minimal list of things set here, sim_year, sim_year_range, and ssp_rcp, other things should be dependent on these and
|
||||||
|
set in a namelist_defaults xml file -->
|
||||||
|
|
||||||
|
<sim_year>2018</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2100</sim_year_range>
|
||||||
|
|
||||||
|
<!-- Use future data as needed from the SSP3-7.0 scenario-->
|
||||||
|
<ssp_rcp>SSP3-7.0</ssp_rcp>
|
||||||
|
|
||||||
|
<stream_year_first_ndep use_cn=".true." >2018</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep use_cn=".true." >2022</stream_year_last_ndep>
|
||||||
|
<model_year_align_ndep use_cn=".true." >2018</model_year_align_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_popdens cnfireson=".true." >2018</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens cnfireson=".true." >2022</stream_year_last_popdens>
|
||||||
|
<model_year_align_popdens cnfireson=".true." >2018</model_year_align_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv >2018</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv >2022</stream_year_last_urbantv>
|
||||||
|
<model_year_align_urbantv >2018</model_year_align_urbantv>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
17
bld/namelist_files/use_cases/2018_control.xml
Normal file
17
bld/namelist_files/use_cases/2018_control.xml
Normal file
@ -0,0 +1,17 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- This use-case is mainly in use for NEON sites -->
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc>Conditions to simulate 2018 land-use</use_case_desc>
|
||||||
|
|
||||||
|
<sim_year>2018</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>constant</sim_year_range>
|
||||||
|
|
||||||
|
<!-- Use future data as needed from the SSP3-7.0 scenario-->
|
||||||
|
<ssp_rcp>SSP3-7.0</ssp_rcp>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
63
bld/namelist_files/use_cases/20thC_transient.xml
Normal file
63
bld/namelist_files/use_cases/20thC_transient.xml
Normal file
@ -0,0 +1,63 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc >Simulate transient land-use, and aerosol deposition changes from 1850 to 2015</use_case_desc>
|
||||||
|
<use_case_desc bgc="cn" >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to 2015</use_case_desc>
|
||||||
|
<use_case_desc use_cn=".true." >Simulate transient land-use, aerosol deposition, and Nitrogen deposition changes from 1850 to 2015</use_case_desc>
|
||||||
|
|
||||||
|
<sim_year>1850</sim_year>
|
||||||
|
|
||||||
|
<sim_year_range>1850-2000</sim_year_range>
|
||||||
|
|
||||||
|
<clm_start_type>arb_ic</clm_start_type>
|
||||||
|
|
||||||
|
<!-- For now use cycle for transient cases until CDEPS issue 201 is resolved
|
||||||
|
<ndep_taxmode use_cn=".true." >limit</ndep_taxmode>
|
||||||
|
-->
|
||||||
|
|
||||||
|
<clm_demand >flanduse_timeseries</clm_demand>
|
||||||
|
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".false." >.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm4_5" >.false.</irrigate>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm4_5" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm4_5" use_cn=".true." >2015</stream_year_last_ndep>
|
||||||
|
<model_year_align_ndep phys="clm4_5" use_cn=".true." >1850</model_year_align_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_0" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_0" use_cn=".true." >2015</stream_year_last_ndep>
|
||||||
|
<model_year_align_ndep phys="clm5_0" use_cn=".true." >1850</model_year_align_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_ndep phys="clm5_1" use_cn=".true." >1850</stream_year_first_ndep>
|
||||||
|
<stream_year_last_ndep phys="clm5_1" use_cn=".true." >2015</stream_year_last_ndep>
|
||||||
|
<model_year_align_ndep phys="clm5_1" use_cn=".true." >1850</model_year_align_ndep>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm4_5" cnfireson=".true." >1850</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm4_5" cnfireson=".true." >2016</stream_year_last_popdens>
|
||||||
|
<model_year_align_popdens phys="clm4_5" cnfireson=".true." >1850</model_year_align_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_0" cnfireson=".true." >1850</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_0" cnfireson=".true." >2016</stream_year_last_popdens>
|
||||||
|
<model_year_align_popdens phys="clm5_0" cnfireson=".true." >1850</model_year_align_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_popdens phys="clm5_1" cnfireson=".true." >1850</stream_year_first_popdens>
|
||||||
|
<stream_year_last_popdens phys="clm5_1" cnfireson=".true." >2016</stream_year_last_popdens>
|
||||||
|
<model_year_align_popdens phys="clm5_1" cnfireson=".true." >1850</model_year_align_popdens>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm4_5" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm4_5" >2106</stream_year_last_urbantv>
|
||||||
|
<model_year_align_urbantv phys="clm4_5" >1850</model_year_align_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_0" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_0" >2106</stream_year_last_urbantv>
|
||||||
|
<model_year_align_urbantv phys="clm5_0" >1850</model_year_align_urbantv>
|
||||||
|
|
||||||
|
<stream_year_first_urbantv phys="clm5_1" >1850</stream_year_first_urbantv>
|
||||||
|
<stream_year_last_urbantv phys="clm5_1" >2106</stream_year_last_urbantv>
|
||||||
|
<model_year_align_urbantv phys="clm5_1" >1850</model_year_align_urbantv>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
42
bld/namelist_files/use_cases/README
Normal file
42
bld/namelist_files/use_cases/README
Normal file
@ -0,0 +1,42 @@
|
|||||||
|
$CTSMROOT/namelist_files/use_cases/README Jun/08/2018
|
||||||
|
|
||||||
|
Naming Convention for CLM use-cases
|
||||||
|
|
||||||
|
The build-namelist script checks for conformance with these conventions and won't work for names that
|
||||||
|
don't follow the convention.
|
||||||
|
|
||||||
|
Ending suffix requires one of these endings: _transient, _control or _pd
|
||||||
|
|
||||||
|
Transient cases:
|
||||||
|
|
||||||
|
yyyy-yyyy_$ssp_rcp$desc_transient (for example 1850-2100_SSP5-8.5_transient)
|
||||||
|
|
||||||
|
or
|
||||||
|
|
||||||
|
20thC$desc_transient (means nominal 1850-2000 although some datasets are 1850-2005)
|
||||||
|
|
||||||
|
or
|
||||||
|
|
||||||
|
yyyy-PD_$desc_transient (means nominal year yyyy through present day (PD) (with the year for PD advancing)
|
||||||
|
|
||||||
|
Control cases:
|
||||||
|
|
||||||
|
yyyy$desc_control
|
||||||
|
|
||||||
|
|
||||||
|
Present day options (uses default present-day simulation year -- which right now is 2000):
|
||||||
|
|
||||||
|
$desc_pd
|
||||||
|
|
||||||
|
Where
|
||||||
|
|
||||||
|
yyyy = Simulation year (such as 1850 or 2000).
|
||||||
|
yyyy-yyyy = Range of simulation years to run over (i.e.. 1850-2000).
|
||||||
|
yyyy-PD = Range of simulation years to run over until present day (i.e.. 2018-2024).
|
||||||
|
$ssp_rcp = Shared Socieconomic Pathway (SSP) Representative concentration pathway (RCP) description string
|
||||||
|
for future scenarios:
|
||||||
|
SSP#-#.# (for example: SSP5-8.5, SSP1-2.6, SSP4-6.0
|
||||||
|
[can be blank for historical cases].
|
||||||
|
$desc = Description of anything else -- alpha-numeric.
|
||||||
|
Should start with an underscore ("_") if not by itself
|
||||||
|
(for _transient and _control).
|
||||||
27
bld/namelist_files/use_cases/stdurbpt_pd.xml
Normal file
27
bld/namelist_files/use_cases/stdurbpt_pd.xml
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<namelist_defaults>
|
||||||
|
|
||||||
|
<use_case_desc>Standard Urban Point Namelist Settings</use_case_desc>
|
||||||
|
|
||||||
|
<hist_empty_htapes>.true.</hist_empty_htapes>
|
||||||
|
|
||||||
|
<hist_dov2xy>.true., .false., .true.</hist_dov2xy>
|
||||||
|
|
||||||
|
<hist_fincl1>'TBUILD','BUILDHEAT','TRAFFICFLUX','WASTEHEAT','SWup','LWup','Rnet','Qh','Qle','Qstor','Qtau','Qanth','Wind','Qair','Tair','PSurf','Rainf','SWdown','LWdown','COSZEN'</hist_fincl1>
|
||||||
|
|
||||||
|
<hist_fincl2>'TG','TBOT','FIRE','FIRA','FLDS','FSDS','FSR','FSA','FGEV','FSH','FGR','TSOI','ERRSOI','BUILDHEAT','SABV','SABG','FSDSVD','FSDSND','FSDSVI','FSDSNI','FSRVD','FSRND','FSRVI','FSRNI','TSA','FCTR','FCEV','QBOT','Q2M','H2OSOI','H2OSNO','SOILLIQ','SOILICE','SWup','LWup','Rnet','Qh','Qle','Qstor','Qtau','Qanth','Wind','Qair','Tair','PSurf','Rainf','SWdown','LWdown','SoilAlpha_U','ZWT'
|
||||||
|
</hist_fincl2>
|
||||||
|
|
||||||
|
<hist_fincl3>'SWup','LWup','Rnet','Qh','Qle','Qstor','Qtau','Qanth','Wind','Qair','Tair','PSurf','Rainf','SWdown','LWdown','FSA','FIRA','TG','COSZEN','SoilAlpha_U','TBUILD','BUILDHEAT'
|
||||||
|
</hist_fincl3>
|
||||||
|
|
||||||
|
<urban_hac>'OFF'</urban_hac>
|
||||||
|
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_1" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".false.">.true.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm5_0" use_cndv=".true." >.false.</irrigate>
|
||||||
|
<irrigate use_crop=".true." phys="clm4_5" >.false.</irrigate>
|
||||||
|
|
||||||
|
</namelist_defaults>
|
||||||
218
bld/unit_testers/NMLTest/CompFiles.pm
Normal file
218
bld/unit_testers/NMLTest/CompFiles.pm
Normal file
@ -0,0 +1,218 @@
|
|||||||
|
###############################################################################
|
||||||
|
#
|
||||||
|
# Module: NMLTest::CompFiles
|
||||||
|
#
|
||||||
|
# Created by Erik Kluzek NCAR
|
||||||
|
#
|
||||||
|
# This is a tester built on top of Test::More to compare namelist files
|
||||||
|
# (or really any ASCII text files). There is a mechanism for telling the
|
||||||
|
# test object that you should (or should NOT) expect the comparison to be
|
||||||
|
# exact or not.
|
||||||
|
#
|
||||||
|
###############################################################################
|
||||||
|
|
||||||
|
package NMLTest::CompFiles;
|
||||||
|
use strict;
|
||||||
|
use Test::More;
|
||||||
|
use IO::File;
|
||||||
|
|
||||||
|
=head1 NAME
|
||||||
|
|
||||||
|
NMLTest::CompFiles - A comparision tester for namelist (or ASCII text) files
|
||||||
|
|
||||||
|
=head1 SYNOPSIS
|
||||||
|
|
||||||
|
=head1 DESCRIPTION
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
sub new {
|
||||||
|
my $self = {};
|
||||||
|
my $class = shift;
|
||||||
|
my $dir = shift;
|
||||||
|
my @files = @_;
|
||||||
|
|
||||||
|
my $nm = ref($self)."\:\:new";
|
||||||
|
|
||||||
|
my %diffref = { };
|
||||||
|
$self->{'diffref'} = \%diffref;
|
||||||
|
if ( ! -d "$dir" ) {
|
||||||
|
die "ERROR::($nm) Input directory ($dir) does NOT exist!\n";
|
||||||
|
}
|
||||||
|
$self->{'dir'} = $dir;
|
||||||
|
$self->{'files'} = \@_;
|
||||||
|
bless( $self, $class );
|
||||||
|
}
|
||||||
|
|
||||||
|
sub checkfilesexist {
|
||||||
|
#
|
||||||
|
# Check that files exist
|
||||||
|
#
|
||||||
|
my $self = shift;
|
||||||
|
my $type = shift;
|
||||||
|
my $mode = shift;
|
||||||
|
my $nm = ref($self)."\:\:checkfilesexist";
|
||||||
|
|
||||||
|
my $filesref = $self->{'files'};
|
||||||
|
my $confdir = $self->{'dir'};
|
||||||
|
foreach my $file ( @$filesref ) {
|
||||||
|
my $exists = ( -f "$confdir/$file" );
|
||||||
|
ok( $exists, "$type $mode: $file file exists" );
|
||||||
|
if ( $exists ) {
|
||||||
|
$self->dodiffonfile( $file, $type, $mode );
|
||||||
|
} else {
|
||||||
|
$self->doNOTdodiffonfile( $file, $type, $mode );
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
sub comparefiles {
|
||||||
|
#
|
||||||
|
# Compare the resultant files to the default versions
|
||||||
|
#
|
||||||
|
my $self = shift;
|
||||||
|
my $type = shift;
|
||||||
|
my $comp_mode = shift;
|
||||||
|
my $compdir = shift;
|
||||||
|
my $nm = ref($self)."\:\:comparefiles";
|
||||||
|
|
||||||
|
$type =~ s#[ '"&/]#+#g;
|
||||||
|
$comp_mode =~ s#[ '"&/]#+#g;
|
||||||
|
my $confdir = $self->{'dir'};
|
||||||
|
my $diffref = $self->{'diffref'};
|
||||||
|
if ( ! defined($type) ) {
|
||||||
|
$type = "default";
|
||||||
|
}
|
||||||
|
my $compare = "compare to previous tag";
|
||||||
|
if ( ! defined($compdir) ) {
|
||||||
|
$compdir = ".";
|
||||||
|
$compare = undef;
|
||||||
|
}
|
||||||
|
if ( ! -d "$compdir" ) {
|
||||||
|
die "ERROR($nm):: Compare directory $compdir does NOT exist!\n";
|
||||||
|
}
|
||||||
|
print "Compare files for $type type MODE=$comp_mode $compare\n";
|
||||||
|
my $diffstat;
|
||||||
|
my %diffhas = %$diffref;
|
||||||
|
my $same = "file the same as expected";
|
||||||
|
my $diff = "file different as expected";
|
||||||
|
my $filesref = $self->{'files'};
|
||||||
|
foreach my $file ( @$filesref ) {
|
||||||
|
if ( ! -f "$compdir/${file}.$comp_mode.${type}" ) {
|
||||||
|
print "WARNING($nm):: File $compdir/${file}.$comp_mode.${type} does NOT exist!\n";
|
||||||
|
fail( "compare file $file DNE for $comp_mode and $type" );
|
||||||
|
} else {
|
||||||
|
if ( ! exists($diffhas{$comp_mode}{$type}{$file}) ) {
|
||||||
|
die "ERROR($nm):: difference is NOT setup for $comp_mode ${type} $file!\n";
|
||||||
|
}
|
||||||
|
system( "diff $confdir/${file} $compdir/${file}.$comp_mode.${type} > /dev/null" );
|
||||||
|
$diffstat = $?;
|
||||||
|
if ( $diffhas{$comp_mode}{$type}{$file} ) {
|
||||||
|
ok( ! $diffstat, "$file $same for $comp_mode" );
|
||||||
|
} else {
|
||||||
|
ok( $diffstat, "$file different as expected for $comp_mode" );
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
sub copyfiles {
|
||||||
|
#
|
||||||
|
# Copy the namelist files to default names for comparisions
|
||||||
|
#
|
||||||
|
my $self = shift;
|
||||||
|
my $type = shift;
|
||||||
|
my $mode = shift;
|
||||||
|
my $nm = ref($self)."\:\:copyfiles";
|
||||||
|
|
||||||
|
$type =~ s#[ '"&/]#+#g;
|
||||||
|
$mode =~ s#[ '"&/]#+#g;
|
||||||
|
my $diffref = $self->{'diffref'};
|
||||||
|
my $filesref = $self->{'files'};
|
||||||
|
my $confdir = $self->{'dir'};
|
||||||
|
foreach my $file ( @$filesref ) {
|
||||||
|
system( "/bin/cp $confdir/$file ${file}.${mode}.${type}" );
|
||||||
|
$$diffref{${mode}}{${type}}{$file} = 1;
|
||||||
|
}
|
||||||
|
print "$type namelists for $mode\n";
|
||||||
|
foreach my $file ( @$filesref ) {
|
||||||
|
system( "/bin/cat $file.${mode}.${type}" );
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
sub shownmldiff {
|
||||||
|
#
|
||||||
|
# Show the differences in the namelists
|
||||||
|
#
|
||||||
|
my $self = shift;
|
||||||
|
my $type = shift;
|
||||||
|
my $comp_mode = shift;
|
||||||
|
my $nm = ref($self)."\:\:shownmldiff";
|
||||||
|
|
||||||
|
$type =~ s#[ '"&/]#+#g;
|
||||||
|
$comp_mode =~ s#[ '"&/]#+#g;
|
||||||
|
my $filesref = $self->{'files'};
|
||||||
|
my $confdir = $self->{'dir'};
|
||||||
|
foreach my $file ( @$filesref ) {
|
||||||
|
my $file1 = "$confdir/$file";
|
||||||
|
if ( ! -f "$file1" ) {
|
||||||
|
print "$file1 does NOT exist\n";
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
my $file2 = "${file}.${comp_mode}.${type}";
|
||||||
|
if ( ! -f "$file2" ) {
|
||||||
|
print "$file2 does NOT exist\n";
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
print "Diff in in $file to $type $comp_mode version";
|
||||||
|
system( "diff $file1 $file2" );
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
sub dodiffonfile {
|
||||||
|
#
|
||||||
|
# Set it so that it does do a difference on the given input file
|
||||||
|
#
|
||||||
|
my $self = shift;
|
||||||
|
my $file = shift;
|
||||||
|
my $type = shift;
|
||||||
|
my $mode = shift;
|
||||||
|
my $nm = ref($self)."\:\:dodiffonfile";
|
||||||
|
|
||||||
|
$type =~ s#[ '"&/]#+#g;
|
||||||
|
$mode =~ s#[ '"&/]#+#g;
|
||||||
|
my $diffref = $self->{'diffref'};
|
||||||
|
if ( ! defined($type) ) {
|
||||||
|
$type = "default";
|
||||||
|
}
|
||||||
|
$$diffref{$mode}{$type}{$file} = 1;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
sub doNOTdodiffonfile {
|
||||||
|
#
|
||||||
|
# Set it so that it does NOT do a difference on the given input file
|
||||||
|
#
|
||||||
|
my $self = shift;
|
||||||
|
my $file = shift;
|
||||||
|
my $type = shift;
|
||||||
|
my $mode = shift;
|
||||||
|
my $nm = ref($self)."\:\:doNOTdodiffonfile";
|
||||||
|
|
||||||
|
$type =~ s#[ '"&/]#+#g;
|
||||||
|
$mode =~ s#[ '"&/]#+#g;
|
||||||
|
my $diffref = $self->{'diffref'};
|
||||||
|
if ( ! defined($type) ) {
|
||||||
|
$type = "default";
|
||||||
|
}
|
||||||
|
$$diffref{$mode}{$type}{$file} = 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
1 # to make use or require happy
|
||||||
1789
bld/unit_testers/build-namelist_test.pl
Normal file
1789
bld/unit_testers/build-namelist_test.pl
Normal file
File diff suppressed because it is too large
Load Diff
3
bld/unit_testers/myuser_nl_clm
Normal file
3
bld/unit_testers/myuser_nl_clm
Normal file
@ -0,0 +1,3 @@
|
|||||||
|
&clm_inparm
|
||||||
|
fsurdat = "$DIN_LOC_ROOT/lnd/clm2/PTCLMmydatafiles/1x1pt_US-UMB/surfdata_1x1pt_US-UMB_simyr2000_clm4_5_c131122.nc"
|
||||||
|
/
|
||||||
45
bld/unit_testers/xFail/expectedClmTestFails.xml
Normal file
45
bld/unit_testers/xFail/expectedClmTestFails.xml
Normal file
@ -0,0 +1,45 @@
|
|||||||
|
<?xml version= "1.0"?>
|
||||||
|
|
||||||
|
<expectedFails>
|
||||||
|
<namelistTest>
|
||||||
|
<yellowstone>
|
||||||
|
<INTEL>
|
||||||
|
<compare>
|
||||||
|
</compare>
|
||||||
|
<generate>
|
||||||
|
</generate>
|
||||||
|
</INTEL>
|
||||||
|
</yellowstone>
|
||||||
|
<goldbach>
|
||||||
|
<INTEL>
|
||||||
|
<compare>
|
||||||
|
</compare>
|
||||||
|
<generate>
|
||||||
|
</generate>
|
||||||
|
</INTEL>
|
||||||
|
</goldbach>
|
||||||
|
</namelistTest>
|
||||||
|
|
||||||
|
<tools_test_driver>
|
||||||
|
<yellowstone>
|
||||||
|
<INTEL>
|
||||||
|
</INTEL>
|
||||||
|
</yellowstone>
|
||||||
|
<goldbach>
|
||||||
|
<INTEL>
|
||||||
|
<entry testId="sm684" failType="FAIL">goldbach not recognized</entry>
|
||||||
|
<entry testId="smf84" failType="FAIL">goldbach not recognized</entry>
|
||||||
|
<entry testId="smfc4" failType="FAIL">goldbach not recognized</entry>
|
||||||
|
</INTEL>
|
||||||
|
</goldbach>
|
||||||
|
</tools_test_driver>
|
||||||
|
|
||||||
|
<unit_tests>
|
||||||
|
<yellowstone>
|
||||||
|
<INTEL>
|
||||||
|
<entry failType="CFAIL">Internal compiler error</entry>
|
||||||
|
</INTEL>
|
||||||
|
</yellowstone>
|
||||||
|
</unit_tests>
|
||||||
|
|
||||||
|
</expectedFails>
|
||||||
668
bld/unit_testers/xFail/expectedFail.pm
Normal file
668
bld/unit_testers/xFail/expectedFail.pm
Normal file
@ -0,0 +1,668 @@
|
|||||||
|
=head1 expectedFail.pm
|
||||||
|
|
||||||
|
Documentation for expectedFail.pm
|
||||||
|
|
||||||
|
=head1 Overview
|
||||||
|
|
||||||
|
The module expectedFail.pm supplies the capability of checking if a failed test is expected to fail.
|
||||||
|
It is called directly from either test_driver.sh (for batch and interactive tests) or build-namelist_test.pl.
|
||||||
|
Future plans involve integrating this module into cesm tests.
|
||||||
|
|
||||||
|
=head1 Use Case
|
||||||
|
|
||||||
|
This is a new feature being added to the existing CLM test infrastructure. The use case would roughly be
|
||||||
|
along the lines of:
|
||||||
|
|
||||||
|
1) Run the test suite (CLM batch,interactive or namelist)
|
||||||
|
2) Search for test failures
|
||||||
|
a) Fix failed tests
|
||||||
|
b) -or- Add new xFail entries to XML file if a test is supposed to fail (eg. due to some missing resolution).
|
||||||
|
3) Check for new tests that now pass. This is for modifying the ChangeLog.
|
||||||
|
4) Update XML file by either adding new entries or removing old ones.
|
||||||
|
5) update the ChangeLog to reflect important changes in test behavior (Tests that now pass that failed before, tests that
|
||||||
|
are now xFail, etc...
|
||||||
|
|
||||||
|
=head2 Public methods
|
||||||
|
|
||||||
|
There are two public methods needed. The "new" ctor and one of the parseOutput* methods.
|
||||||
|
Everything else is private.
|
||||||
|
|
||||||
|
xFail::expectedFail->new
|
||||||
|
parseOutput
|
||||||
|
parseOutputCLM
|
||||||
|
|
||||||
|
=head2 Private methods
|
||||||
|
|
||||||
|
sub _searchExpectedFail
|
||||||
|
sub _readXml
|
||||||
|
sub _testNowPassing
|
||||||
|
sub _printOutput
|
||||||
|
sub _getTestType
|
||||||
|
sub _getMachInfo
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
package xFail::expectedFail;
|
||||||
|
|
||||||
|
our $VERSION = '1.00';
|
||||||
|
|
||||||
|
use Cwd;
|
||||||
|
use strict;
|
||||||
|
use Getopt::Long;
|
||||||
|
use English;
|
||||||
|
use Scalar::Util qw(looks_like_number);
|
||||||
|
|
||||||
|
my @testList={};
|
||||||
|
my $DEBUG=0;
|
||||||
|
|
||||||
|
my $pass=" PASS";
|
||||||
|
my $fail=" FAIL";
|
||||||
|
my $xfail="xFAIL";
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 CTOR
|
||||||
|
|
||||||
|
Constructor for the class. Reads in three arguments:
|
||||||
|
_callingName -> name of the script creating the new object
|
||||||
|
_compareGenerate -> compare or generate option
|
||||||
|
_totTests -> total number of tests to run
|
||||||
|
|
||||||
|
Calls _readXml which reads the file expectedClmTestFails.xml and stores it memory
|
||||||
|
for later searches.
|
||||||
|
|
||||||
|
returns: new object ($self)
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub new {
|
||||||
|
my ($class_name) = @_;
|
||||||
|
my $self = {
|
||||||
|
_className => shift,
|
||||||
|
_callingName => shift,
|
||||||
|
_compareGenerate => shift,
|
||||||
|
_totTests => shift,
|
||||||
|
_foundList => undef,
|
||||||
|
_numericalTestId => undef
|
||||||
|
};
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print "$self->{_callingName}\n";
|
||||||
|
print "$self->{_compareGenerate}\n";
|
||||||
|
}
|
||||||
|
|
||||||
|
bless ($self, $class_name);
|
||||||
|
|
||||||
|
$self->{_numericalTestId}=0;
|
||||||
|
$self->{_created} = 1;
|
||||||
|
|
||||||
|
$self->_readXml();
|
||||||
|
|
||||||
|
return $self;
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 parseOutput
|
||||||
|
|
||||||
|
parseOutput parsese the output from the build-namelist_test.pl script. It is similar
|
||||||
|
to, but not interchangable with parseOutputCLM.
|
||||||
|
|
||||||
|
The only argument is that of the reference variable that contains the information dumped
|
||||||
|
by Test::More.
|
||||||
|
|
||||||
|
returns: nothing
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub parseOutput
|
||||||
|
{
|
||||||
|
|
||||||
|
|
||||||
|
my $report;
|
||||||
|
my $testId;
|
||||||
|
my @testName={};
|
||||||
|
my $testReason;
|
||||||
|
|
||||||
|
my ($self, $output) = @_ ;
|
||||||
|
|
||||||
|
#_#===========================================
|
||||||
|
#_# keep this in for logging
|
||||||
|
#_#===========================================
|
||||||
|
print ("captured output is :: \n $output \n");
|
||||||
|
|
||||||
|
#_# split the output from Test::More output on newline
|
||||||
|
my @refList = split('\n', $output);
|
||||||
|
|
||||||
|
#_# process any buffered output which happens when a subroutine from build-namelist_test.pl
|
||||||
|
#_# itself calls some testing routines
|
||||||
|
foreach my $refSplit (@refList) {
|
||||||
|
|
||||||
|
#_# always look at the last element of refSplit since that will have the info. from the
|
||||||
|
#_# last test run
|
||||||
|
|
||||||
|
my @outArr=split(/ /,$refSplit);
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("\nxFail::expectedFail::parseOutput @outArr[0] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[1] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[2] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[3] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[4] \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
my $size = @outArr-1;
|
||||||
|
|
||||||
|
#_# first case, we have a passed (ok) test
|
||||||
|
if (@outArr[0] eq "ok") {
|
||||||
|
$self->{_numericalTestId}++;
|
||||||
|
|
||||||
|
$report=$pass;
|
||||||
|
$testId=@outArr[1];
|
||||||
|
@testName=@outArr[3..$size];
|
||||||
|
$testReason="";
|
||||||
|
|
||||||
|
my ($retVal,$xFailText)=$self->_searchExpectedFail($testId);
|
||||||
|
|
||||||
|
my $testReason=$self->_testNowPassing($testId,$retVal,$xFailText);
|
||||||
|
|
||||||
|
if($DEBUG){
|
||||||
|
print("$testReason \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
$self->_printOutput($report,$testId,$testReason,@testName);
|
||||||
|
|
||||||
|
|
||||||
|
#_# deal with the case of a failed (not ok) test
|
||||||
|
} elsif (@outArr[0] eq "not") {
|
||||||
|
$self->{_numericalTestId}++;
|
||||||
|
|
||||||
|
$testId=@outArr[2];
|
||||||
|
my ($retVal,$xFailText)=$self->_searchExpectedFail($testId);
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("xFail::expectedFail::parseOutput Id $retVal,$xFailText \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
@testName=@outArr[4..$size];
|
||||||
|
|
||||||
|
if ($retVal eq "TRUE"){
|
||||||
|
#_# found an expected FAIL (xFAIL)
|
||||||
|
$report=$xfail;
|
||||||
|
$testReason= "<Note: $xFailText>";
|
||||||
|
} else {
|
||||||
|
#_# print a regular FAIL
|
||||||
|
$report=$fail;
|
||||||
|
$testReason="";
|
||||||
|
}
|
||||||
|
|
||||||
|
$self->_printOutput($report,$testId,$testReason,@testName);
|
||||||
|
|
||||||
|
} else {
|
||||||
|
#_# skipping line. Trying to parse error code from Test::More
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
#_# this resets the reference that points to $output (\$captOut) on the caller side
|
||||||
|
@_[1]="";
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 parseOutputCLM
|
||||||
|
|
||||||
|
parseOutputCLM parsese the output from the test_driver.sh script. It is similar
|
||||||
|
to, but not interchangable with parseOutput.
|
||||||
|
|
||||||
|
parseOutputCLM takes one arguments:
|
||||||
|
$statFoo-> the name of the td.<pid>.status file
|
||||||
|
|
||||||
|
returns: nothing
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub parseOutputCLM
|
||||||
|
{
|
||||||
|
|
||||||
|
my $report;
|
||||||
|
my $testId;
|
||||||
|
my @testName={};
|
||||||
|
my $testReason;
|
||||||
|
|
||||||
|
my ($self, $statFoo) = @_ ;
|
||||||
|
|
||||||
|
open(FOO, "< $statFoo"); # open for input
|
||||||
|
open(FOO_OUT, "> $statFoo.xFail"); # open for input
|
||||||
|
|
||||||
|
my(@reportLines);
|
||||||
|
|
||||||
|
while (<FOO>) {
|
||||||
|
|
||||||
|
my($line) = $_;
|
||||||
|
|
||||||
|
my @outArr=split(/ /,$line);
|
||||||
|
if (looks_like_number(@outArr[0])) {
|
||||||
|
|
||||||
|
$self->{_numericalTestId}++;
|
||||||
|
|
||||||
|
my $num=sprintf("%03d", $self->{_numericalTestId});
|
||||||
|
my $totNum=sprintf("%03d", $self->{_totTests});
|
||||||
|
|
||||||
|
#_# last element has the pass/fail info.
|
||||||
|
chomp(@outArr[-1]);
|
||||||
|
my $repPass=substr(@outArr[-1], -4, 4);
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[0] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[1] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[2] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[3] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[4] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[5] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[6] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput @outArr[-1] \n");
|
||||||
|
print ("xFail::expectedFail::parseOutput $repPass \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
my $size = @outArr-1;
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("size of line $size \n");
|
||||||
|
}
|
||||||
|
my $endOfDesc=$size-1;
|
||||||
|
|
||||||
|
if ($repPass eq "PASS") {
|
||||||
|
$report=$pass;
|
||||||
|
$testId=@outArr[1];
|
||||||
|
@testName=@outArr[2..$endOfDesc];
|
||||||
|
|
||||||
|
my ($retVal,$xFailText)=$self->_searchExpectedFail($testId);
|
||||||
|
|
||||||
|
my $testReason=$self->_testNowPassing($testId,$retVal,$xFailText);
|
||||||
|
|
||||||
|
#_# print out the test results
|
||||||
|
print FOO_OUT ("$num/$totNum <$report> <Test Id: $testId> <Desc: @testName> $testReason \n");
|
||||||
|
|
||||||
|
} else {
|
||||||
|
$testId=@outArr[1];
|
||||||
|
my ($retVal,$xFailText)=$self->_searchExpectedFail($testId);
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("xFail::expectedFail::parseOutput Id $retVal,$xFailText \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
@testName=@outArr[2..$endOfDesc];
|
||||||
|
|
||||||
|
if ($retVal eq "TRUE"){
|
||||||
|
#_# found an expected FAIL (xFAIL)
|
||||||
|
$report=$xfail;
|
||||||
|
$testReason= "<Note: $xFailText>";
|
||||||
|
} else {
|
||||||
|
#_# print a regular FAIL
|
||||||
|
$report=$fail;
|
||||||
|
$testReason="";
|
||||||
|
}
|
||||||
|
|
||||||
|
#_# print out the test results
|
||||||
|
print FOO_OUT ("$num/$totNum <$report> <Test Id: $testId> <Desc: @testName> $testReason \n");
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
} else {
|
||||||
|
print FOO_OUT $line;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
close(FOO);
|
||||||
|
close(FOO_OUT);
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 _searchExpectedFail
|
||||||
|
|
||||||
|
searches the list of expected fails for a match with testId.
|
||||||
|
|
||||||
|
_searchExpectedFail takes one arguments:
|
||||||
|
$testId-> the test id (numerical or string) that we want to search for
|
||||||
|
|
||||||
|
returns: $retVal (TRUE or FALSE) if id was found
|
||||||
|
$text text from XML file
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub _searchExpectedFail
|
||||||
|
{
|
||||||
|
my ( $self,$testId) = @_;
|
||||||
|
|
||||||
|
#search through list for test ID
|
||||||
|
my $retVal="FALSE";
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("here 2 Id $self->{_foundList} \n");
|
||||||
|
}
|
||||||
|
if ($self->{_foundList} eq "FALSE"){
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("returning early Id \n");
|
||||||
|
}
|
||||||
|
return $retVal;
|
||||||
|
}
|
||||||
|
|
||||||
|
my $failType;
|
||||||
|
my $text;
|
||||||
|
foreach my $tL (@testList) {
|
||||||
|
my %tAtts = $tL->get_attributes();
|
||||||
|
my $tid=$tAtts{'testId'};
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("_seachExpectedFail Id $tid $testId \n");
|
||||||
|
}
|
||||||
|
if ($tid eq $testId) {
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("here Id \n");
|
||||||
|
}
|
||||||
|
#~# found the test we're looking for
|
||||||
|
$text=$tL->get_text();
|
||||||
|
$failType=$tAtts{'failType'};
|
||||||
|
if ($failType eq "xFail"){
|
||||||
|
$retVal="TRUE";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return ($retVal,$text);
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 _readXml
|
||||||
|
|
||||||
|
reads the xml file for a particular machine, compiler, test type and (compare
|
||||||
|
| generate) setup and saves it in memory for searching by _searchExpectedFail.
|
||||||
|
|
||||||
|
_readXml takes no arguments
|
||||||
|
|
||||||
|
returns: nothing
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub _readXml
|
||||||
|
{
|
||||||
|
my ( $self ) = @_;
|
||||||
|
|
||||||
|
#Figure out where configure directory is and where can use the XML/Lite module from
|
||||||
|
my $ProgName;
|
||||||
|
($ProgName = $PROGRAM_NAME) =~ s!(.*)/!!; # name of program
|
||||||
|
my $ProgDir = $1; # name of directory where program lives
|
||||||
|
|
||||||
|
my $cwd = getcwd(); # current working directory
|
||||||
|
my $cfgdir;
|
||||||
|
|
||||||
|
if ($ProgDir) { $cfgdir = $ProgDir; }
|
||||||
|
else { $cfgdir = $cwd; }
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
# Add $cfgdir to the list of paths that Perl searches for modules
|
||||||
|
my @dirs = ( $cfgdir, "$cfgdir/perl5lib",
|
||||||
|
"$cfgdir/../../cime/utils/perl5lib",
|
||||||
|
"$cfgdir/../../../../cime/utils/perl5lib"
|
||||||
|
);
|
||||||
|
unshift @INC, @dirs;
|
||||||
|
my $result = eval "require XML::Lite";
|
||||||
|
if ( ! defined($result) ) {
|
||||||
|
die <<"EOF";
|
||||||
|
** Cannot find perl module \"XML/Lite.pm\" from directories: @dirs **
|
||||||
|
EOF
|
||||||
|
}
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
my ($machine,$compiler)=_getMachInfo();
|
||||||
|
|
||||||
|
my $testType=$self->_getTestType($self->{_callingName});
|
||||||
|
|
||||||
|
|
||||||
|
my $xmlFile=undef;
|
||||||
|
if ($testType eq "clmInteractive" || $testType eq "clmBatch") {
|
||||||
|
$xmlFile = "$cfgdir/expectedClmTestFails.xml";
|
||||||
|
} elsif ($testType eq "namelistTest") {
|
||||||
|
$xmlFile = "xFail/expectedClmTestFails.xml";
|
||||||
|
} else {
|
||||||
|
$xmlFile = "xFail/expectedClmTestFails.xml";
|
||||||
|
}
|
||||||
|
my $xml = XML::Lite->new($xmlFile);
|
||||||
|
|
||||||
|
my $root = $xml->root_element();
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print "_readXml $self->{_callingName}\n";
|
||||||
|
print "_readXml $self->{_compareGenerate}\n";
|
||||||
|
print "_readXml $xmlFile \n";
|
||||||
|
print ("_readXml Debug testType $testType \n");
|
||||||
|
print ("_readXml Debug machine $machine \n");
|
||||||
|
print ("_readXml Debug compiler $compiler \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
# Check for valid root node
|
||||||
|
my $name = $root->get_name();
|
||||||
|
$name eq "expectedFails" or die
|
||||||
|
"readExpectedFail.pm::_readXml :: $xmlFile is not a file that contains expected test failures\n";
|
||||||
|
|
||||||
|
my @e = $xml->elements_by_name($testType);
|
||||||
|
|
||||||
|
$self->{_foundList}="FALSE";
|
||||||
|
|
||||||
|
### populate list of tests for a specfic test type, machine and compiler
|
||||||
|
### there's got to be a better way to write this
|
||||||
|
while ( my $e = shift @e ) {
|
||||||
|
my @mChildren = $e->get_children();
|
||||||
|
foreach my $mChild (@mChildren) {
|
||||||
|
my $mName=$mChild->get_name();
|
||||||
|
if ($mName eq $machine){
|
||||||
|
my @cChildren = $mChild->get_children();
|
||||||
|
foreach my $cChild (@cChildren) {
|
||||||
|
my $cName=$cChild->get_name();
|
||||||
|
if ($cName eq $compiler) {
|
||||||
|
my @cgChildren=$cChild->get_children();
|
||||||
|
foreach my $cgChild (@cgChildren) {
|
||||||
|
my $cgName=$cgChild->get_name();
|
||||||
|
if($cgName eq $self->{_compareGenerate}){
|
||||||
|
@testList=$cgChild->get_children();
|
||||||
|
$self->{_foundList}="TRUE";
|
||||||
|
last;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
if ($DEBUG) {
|
||||||
|
print ("here 1 $self->{_foundList} \n");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 _testNowPassing
|
||||||
|
|
||||||
|
reads the xml file for a particular machine, compiler, test type and (compare
|
||||||
|
| generate) setup and saves it in memory for searching by _searchExpectedFail.
|
||||||
|
|
||||||
|
_testNowPassing takes three arguments:
|
||||||
|
$id - test id to print out
|
||||||
|
$retVal - TRUE or FALSE. Was the id found in the expected fail list
|
||||||
|
$xmlText - text from the XML notes section of the file. (Currently not used,
|
||||||
|
may be used in future).
|
||||||
|
|
||||||
|
returns: a text string
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub _testNowPassing
|
||||||
|
{
|
||||||
|
|
||||||
|
my ($self, $id, $retVal, $xmlText) = @_ ;
|
||||||
|
my $text=undef;
|
||||||
|
|
||||||
|
if ($retVal eq "TRUE") {
|
||||||
|
#_# found a test that passes now, but is listed as an xFail
|
||||||
|
$text = "<NOTE: $id is a new PASS; was xFAIL>\n";
|
||||||
|
|
||||||
|
} else {
|
||||||
|
#_# this test passes and was not previously listed as an xFail
|
||||||
|
#_# noOp
|
||||||
|
}
|
||||||
|
|
||||||
|
return $text;
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 _printOutput
|
||||||
|
|
||||||
|
method that prints output for status files.
|
||||||
|
|
||||||
|
_printOutput takes four arguments:
|
||||||
|
$report - PASS,FAIL,xFAIL
|
||||||
|
$testId - test id to print out
|
||||||
|
$testReason - for xFAIL and new PASSES, additional reporting
|
||||||
|
@testName - test description from original test
|
||||||
|
|
||||||
|
returns: a text string
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub _printOutput
|
||||||
|
{
|
||||||
|
|
||||||
|
my ($self, $report, $testId, $testReason, @testName) = @_ ;
|
||||||
|
|
||||||
|
#_# print out the test results
|
||||||
|
my $num=sprintf("%03d", $self->{_numericalTestId});
|
||||||
|
my $totNum=sprintf("%03d", $self->{_totTests});
|
||||||
|
print ("$num/$totNum <$report> <Test Id: $testId> <Desc: @testName> $testReason \n");
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 _getTestType
|
||||||
|
|
||||||
|
method that takes the name of the calling script and returns the type of
|
||||||
|
test. Used for searching the expected fail list.
|
||||||
|
|
||||||
|
_getTestType takes four arguments:
|
||||||
|
$name - name of calling script
|
||||||
|
|
||||||
|
returns: $type, the type of test
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub _getTestType
|
||||||
|
{
|
||||||
|
|
||||||
|
my ($self, $name) = @_ ;
|
||||||
|
|
||||||
|
if($DEBUG){
|
||||||
|
print ("_getTestType $name");
|
||||||
|
}
|
||||||
|
|
||||||
|
my %testTypes = (
|
||||||
|
"build-namelist_test.pl" => "namelistTest",
|
||||||
|
"test_driver.sh-i" => "clmInteractive",
|
||||||
|
"test_driver.sh" => "clmBatch",
|
||||||
|
"clm-cesm.sh" => "cesm"
|
||||||
|
);
|
||||||
|
|
||||||
|
my $type = $testTypes {lc $name} || "unknown";
|
||||||
|
return $type;
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
|
||||||
|
=head1 _getMachInfo
|
||||||
|
|
||||||
|
method that figures out on what platform this is running and returns a 2 digit
|
||||||
|
machine identifier and the compiler. This will eventually contain multiple
|
||||||
|
compiler for various machines.
|
||||||
|
|
||||||
|
_getMachInfo takes no arguments
|
||||||
|
|
||||||
|
returns: $mach - the machine I'm running on
|
||||||
|
$comp - the compiler being used
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
##############################################################################
|
||||||
|
#
|
||||||
|
##############################################################################
|
||||||
|
sub _getMachInfo
|
||||||
|
{
|
||||||
|
|
||||||
|
my $name=`uname -n`;
|
||||||
|
$name = substr($name, 0, 2);
|
||||||
|
|
||||||
|
my %machNames = (
|
||||||
|
"ys" => "yellowstone",
|
||||||
|
"fr" => "frankfurt"
|
||||||
|
);
|
||||||
|
|
||||||
|
my %compNames = (
|
||||||
|
"ys" => "INTEL",
|
||||||
|
"fr" => "INTEL"
|
||||||
|
);
|
||||||
|
|
||||||
|
my $mach = $machNames {lc $name} || "unknown";
|
||||||
|
my $comp = $compNames {lc $name} || "unknown";
|
||||||
|
|
||||||
|
return ($mach,$comp);
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
# A Perl module must end with a true value or else it is considered not to
|
||||||
|
# have loaded. By convention this value is usually 1 though it can be
|
||||||
|
# any true value. A module can end with false to indicate failure but
|
||||||
|
# this is rarely used and it would instead die() (exit with an error).
|
||||||
|
1;
|
||||||
128
bld/unit_testers/xFail/wrapClmTests.pl
Normal file
128
bld/unit_testers/xFail/wrapClmTests.pl
Normal file
@ -0,0 +1,128 @@
|
|||||||
|
#!/usr/bin/env perl
|
||||||
|
|
||||||
|
#-# =========================================================================================
|
||||||
|
|
||||||
|
=head1 wrapClmTest.pl
|
||||||
|
|
||||||
|
=head1 Overview
|
||||||
|
|
||||||
|
This is a wrapper script that is called from test_driver.sh for either interactive or batch
|
||||||
|
tests. It calls the CTOR for the xFail::expectedFail.pm module and also parses the td*.status
|
||||||
|
file to create a new file with xFails listed.
|
||||||
|
|
||||||
|
It takes the following arguments:
|
||||||
|
|
||||||
|
numberOfTests -> number of tests from test_driver.sh
|
||||||
|
statusFile -> name of the td.<pid>.status file
|
||||||
|
callingScript -> name of script calling this. For test_driver.sh it may be one of:
|
||||||
|
1) test_driver.sh-i for interactive tests
|
||||||
|
2) test_driver.sh for batch tests
|
||||||
|
|
||||||
|
=head1 Notes
|
||||||
|
|
||||||
|
This script may be run standalone which is useful for testing purposes.
|
||||||
|
|
||||||
|
=cut
|
||||||
|
|
||||||
|
#-# =========================================================================================
|
||||||
|
|
||||||
|
use strict;
|
||||||
|
use Getopt::Long;
|
||||||
|
use English;
|
||||||
|
use Cwd;
|
||||||
|
use Scalar::Util qw(looks_like_number);
|
||||||
|
|
||||||
|
my $DEBUG=0;
|
||||||
|
|
||||||
|
sub usage {
|
||||||
|
die <<EOF;
|
||||||
|
SYNOPSIS
|
||||||
|
wrapClmTests [options]
|
||||||
|
|
||||||
|
Usually called from test_driver.sh. Scans the td.*.status file and checks for expected test failures.
|
||||||
|
OPTIONS
|
||||||
|
-help [or -h] Print usage to STDOUT.
|
||||||
|
-numberOfTests "numberOfTests"
|
||||||
|
-statusFile "statusFile" Name of status file
|
||||||
|
-callingScript "callingScript" Name of calling script
|
||||||
|
|
||||||
|
EOF
|
||||||
|
}
|
||||||
|
|
||||||
|
#
|
||||||
|
# Process command-line options.
|
||||||
|
#
|
||||||
|
my %opts = ( help => 0,
|
||||||
|
numberOfTests => undef,
|
||||||
|
statusFile => undef,
|
||||||
|
callingScript => undef,
|
||||||
|
);
|
||||||
|
|
||||||
|
GetOptions(
|
||||||
|
"h|help" => \$opts{'help'},
|
||||||
|
"numberOfTests=s" => \$opts{'numberOfTests'},
|
||||||
|
"statusFile=s" => \$opts{'statusFile'},
|
||||||
|
"callingScript=s" => \$opts{'callingScript'},
|
||||||
|
) or usage();
|
||||||
|
|
||||||
|
# Give usage message.
|
||||||
|
usage() if $opts{'help'};
|
||||||
|
|
||||||
|
my $statFoo = undef;
|
||||||
|
my $nTests = undef;
|
||||||
|
my $script= undef;
|
||||||
|
|
||||||
|
if (defined($opts{'statusFile'})) {
|
||||||
|
$statFoo = $opts{'statusFile'};
|
||||||
|
}
|
||||||
|
if (defined($opts{'numberOfTests'})) {
|
||||||
|
$nTests = $opts{'numberOfTests'};
|
||||||
|
}
|
||||||
|
if (defined($opts{'callingScript'})) {
|
||||||
|
$script = $opts{'callingScript'};
|
||||||
|
}
|
||||||
|
|
||||||
|
my ( $self ) = @_;
|
||||||
|
|
||||||
|
#Figure out where configure directory is and where can use the XML/Lite module from
|
||||||
|
my $ProgName;
|
||||||
|
($ProgName = $PROGRAM_NAME) =~ s!(.*)/!!; # name of program
|
||||||
|
my $ProgDir = $1; # name of directory where program lives
|
||||||
|
|
||||||
|
my $cwd = getcwd(); # current working directory
|
||||||
|
my $cfgdir;
|
||||||
|
|
||||||
|
if ($ProgDir) { $cfgdir = $ProgDir; }
|
||||||
|
else { $cfgdir = $cwd; }
|
||||||
|
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
# Add $cfgdir to the list of paths that Perl searches for modules
|
||||||
|
#-----------------------------------------------------------------------------------------------
|
||||||
|
my @dirs = ( $cfgdir,
|
||||||
|
"$cfgdir/../",
|
||||||
|
"$cfgdir/../../../../../cime/utils/perl5lib");
|
||||||
|
unshift @INC, @dirs;
|
||||||
|
my $result = eval "require expectedFail";
|
||||||
|
if ( ! defined($result) ) {
|
||||||
|
die <<"EOF";
|
||||||
|
** Cannot find perl module \"xFail/expectedFail.pm\" from directories: @dirs **
|
||||||
|
EOF
|
||||||
|
}
|
||||||
|
|
||||||
|
#_# ====================================
|
||||||
|
#_# setup work complete. Now parse file
|
||||||
|
#_# ====================================
|
||||||
|
|
||||||
|
if ($DEBUG) {
|
||||||
|
print (" wrapClmTests.pl:: calling script $script \n");
|
||||||
|
print (" wrapClmTests.pl:: number of tests $nTests \n");
|
||||||
|
print (" wrapClmTests.pl:: processing $statFoo \n");
|
||||||
|
}
|
||||||
|
|
||||||
|
#_# compGen not used for CLM batch or interactive tests, but we use "compare" as the default in this case
|
||||||
|
my $compGen="compare";
|
||||||
|
my $xFail = xFail::expectedFail->new($script,$compGen,$nTests);
|
||||||
|
|
||||||
|
$xFail->parseOutputCLM($statFoo);
|
||||||
|
|
||||||
|
exit(0);
|
||||||
0
cime_config/SystemTests/__init__.py
Normal file
0
cime_config/SystemTests/__init__.py
Normal file
94
cime_config/SystemTests/fsurdatmodifyctsm.py
Normal file
94
cime_config/SystemTests/fsurdatmodifyctsm.py
Normal file
@ -0,0 +1,94 @@
|
|||||||
|
"""
|
||||||
|
CTSM-specific test that first runs the fsurdat_modifier tool and then ensures
|
||||||
|
that the CTSM does not fail using the just-generated modified fsurdat file
|
||||||
|
"""
|
||||||
|
|
||||||
|
import os
|
||||||
|
import re
|
||||||
|
from CIME.SystemTests.system_tests_common import SystemTestsCommon
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
# For calling fsurdat_modifier
|
||||||
|
from argparse import Namespace
|
||||||
|
|
||||||
|
_CTSM_PYTHON = os.path.join(
|
||||||
|
os.path.dirname(os.path.realpath(__file__)), os.pardir, os.pardir, "python"
|
||||||
|
)
|
||||||
|
sys.path.insert(1, _CTSM_PYTHON)
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class FSURDATMODIFYCTSM(SystemTestsCommon):
|
||||||
|
def __init__(self, case):
|
||||||
|
"""
|
||||||
|
initialize an object interface to the SMS system test
|
||||||
|
"""
|
||||||
|
SystemTestsCommon.__init__(self, case)
|
||||||
|
|
||||||
|
if not os.path.exists(
|
||||||
|
os.path.join(self._get_caseroot(), "done_FSURDATMODIFYCTSM_setup.txt")
|
||||||
|
):
|
||||||
|
# Create out-of-the-box lnd_in to obtain fsurdat_in
|
||||||
|
case.create_namelists(component="lnd")
|
||||||
|
# If fsurdat_in does not exist, download it from the server
|
||||||
|
case.check_all_input_data()
|
||||||
|
|
||||||
|
lnd_in_path = os.path.join(self._get_caseroot(), "CaseDocs/lnd_in")
|
||||||
|
with open(lnd_in_path, "r") as lnd_in:
|
||||||
|
for line in lnd_in:
|
||||||
|
fsurdat_in = re.match(r" *fsurdat *= *'(.*)'", line)
|
||||||
|
if fsurdat_in:
|
||||||
|
self._fsurdat_in = fsurdat_in.group(1)
|
||||||
|
break
|
||||||
|
|
||||||
|
self._fsurdat_out = os.path.join(self._get_caseroot(), "fsurdat.nc")
|
||||||
|
self._ctsm_root = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
self._cfg_file_path = os.path.join(self._get_caseroot(), "modify_fsurdat.cfg")
|
||||||
|
|
||||||
|
logger.info(" create config file to modify")
|
||||||
|
self._create_config_file()
|
||||||
|
logger.info(" run modify_fsurdat")
|
||||||
|
self._run_modify_fsurdat()
|
||||||
|
logger.info(" modify user_nl files")
|
||||||
|
self._modify_user_nl()
|
||||||
|
with open("done_FSURDATMODIFYCTSM_setup.txt", "w") as fp:
|
||||||
|
pass
|
||||||
|
|
||||||
|
def _create_config_file(self):
|
||||||
|
cfg_template_path = os.path.join(
|
||||||
|
self._ctsm_root, "tools/modify_input_files/modify_fsurdat_template.cfg"
|
||||||
|
)
|
||||||
|
|
||||||
|
with open(self._cfg_file_path, "w") as cfg_out:
|
||||||
|
with open(cfg_template_path, "r") as cfg_in:
|
||||||
|
for line in cfg_in:
|
||||||
|
if re.match(r" *fsurdat_in *=", line):
|
||||||
|
line = "fsurdat_in = {}".format(self._fsurdat_in)
|
||||||
|
elif re.match(r" *fsurdat_out *=", line):
|
||||||
|
line = "fsurdat_out = {}".format(self._fsurdat_out)
|
||||||
|
elif re.match(r" *idealized *=", line):
|
||||||
|
line = "idealized = True"
|
||||||
|
cfg_out.write(line)
|
||||||
|
|
||||||
|
def _run_modify_fsurdat(self):
|
||||||
|
fsurdat_modifier_args = Namespace(
|
||||||
|
cfg_path=self._cfg_file_path,
|
||||||
|
debug=False,
|
||||||
|
fsurdat_in="UNSET",
|
||||||
|
fsurdat_out="UNSET",
|
||||||
|
overwrite=False,
|
||||||
|
silent=False,
|
||||||
|
verbose=False,
|
||||||
|
)
|
||||||
|
from ctsm.modify_input_files.fsurdat_modifier import fsurdat_modifier
|
||||||
|
|
||||||
|
fsurdat_modifier(fsurdat_modifier_args)
|
||||||
|
|
||||||
|
def _modify_user_nl(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="fsurdat = '{}'".format(self._fsurdat_out),
|
||||||
|
)
|
||||||
24
cime_config/SystemTests/funitctsm.py
Normal file
24
cime_config/SystemTests/funitctsm.py
Normal file
@ -0,0 +1,24 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CTSM FUNIT test.
|
||||||
|
|
||||||
|
This "system" test runs CTSM's Fortran unit tests. We're abusing the system test
|
||||||
|
infrastructure to run these, so that a run of the test suite can result in the unit tests
|
||||||
|
being run as well.
|
||||||
|
|
||||||
|
Grid and compset are irrelevant for this test type.
|
||||||
|
"""
|
||||||
|
|
||||||
|
import os
|
||||||
|
from CIME.SystemTests.funit import FUNIT
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class FUNITCTSM(FUNIT):
|
||||||
|
def __init__(self, case):
|
||||||
|
FUNIT.__init__(self, case)
|
||||||
|
|
||||||
|
def get_test_spec_dir(self):
|
||||||
|
lnd_root = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
return os.path.join(lnd_root, "src")
|
||||||
41
cime_config/SystemTests/lciso.py
Normal file
41
cime_config/SystemTests/lciso.py
Normal file
@ -0,0 +1,41 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME LCISO (Land Carbon Isotope) test.
|
||||||
|
|
||||||
|
This is a CTSM specific test:
|
||||||
|
Verifies turning on carbon isotopes doesn't change answers
|
||||||
|
(1) do a run with Carbon isotopes off (suffix base)
|
||||||
|
(2) add C13 and C14 carbon isotopes on with their time-series (suffix cisoallon)
|
||||||
|
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LCISO(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
self.comp = case.get_value("COMP_LND")
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="cisoallon",
|
||||||
|
run_one_description="carbon isotopes off",
|
||||||
|
run_two_description="c13 and c14 isotopes on as well as C isotope time series",
|
||||||
|
ignore_fieldlist_diffs=True,
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(), component=self.comp, contents="use_c13=F, use_c14=F"
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component=self.comp,
|
||||||
|
contents="use_c13=.true.,use_c14=.true.,use_c13_timeseries=.true.,use_c14_bombspike=.true.",
|
||||||
|
)
|
||||||
47
cime_config/SystemTests/lgrain2.py
Normal file
47
cime_config/SystemTests/lgrain2.py
Normal file
@ -0,0 +1,47 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME LGRAIN2 (Land 2-grain-pool) test.
|
||||||
|
|
||||||
|
This is a CTSM specific test: Verifies that we can allocate and use a second grain pool,
|
||||||
|
and that answers are identical to a run with a single grain pool. This is useful until we
|
||||||
|
have tests that include AgSys, which will exercise this capability more completely.
|
||||||
|
|
||||||
|
(1) do a run with a second grain pool
|
||||||
|
(2) do a standard run only a single grain pool
|
||||||
|
|
||||||
|
The reason for having the second grain pool in the first case (rather than the other way
|
||||||
|
around) is that this results in having a few extra fields present in the baselines.
|
||||||
|
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LGRAIN2(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="grain1",
|
||||||
|
run_one_description="use a second grain pool",
|
||||||
|
run_two_description="use a single grain pool",
|
||||||
|
ignore_fieldlist_diffs=True,
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="for_testing_use_second_grain_pool=.true.",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="for_testing_use_second_grain_pool=.false.",
|
||||||
|
)
|
||||||
58
cime_config/SystemTests/lii.py
Normal file
58
cime_config/SystemTests/lii.py
Normal file
@ -0,0 +1,58 @@
|
|||||||
|
"""Implementation of the CIME LII test.
|
||||||
|
|
||||||
|
This is a CLM specific test:
|
||||||
|
Verifies that interpolation of initial conditions onto an identical
|
||||||
|
configuration gives identical results:
|
||||||
|
(1) do a run with use_init_interp true (suffix base)
|
||||||
|
(2) do a run with use_init_interp false (suffix no_interp)
|
||||||
|
|
||||||
|
It is more intuitive to think of the no_interp test as the "base". However, we
|
||||||
|
do the use_init_interp=true test first to facilitate updating initial conditions
|
||||||
|
whenever this is necessary, as documented below.
|
||||||
|
|
||||||
|
The LII test needs to point to an initial conditions file that is compatible
|
||||||
|
with the given model configuration. Thus, the pointed-to initial conditions file
|
||||||
|
needs to be updated whenever surface datasets are changed, or the land-mask is
|
||||||
|
changed, or an imporant change is made to model physics (for example where new
|
||||||
|
fields are added to the restart file). The procedure for updating the initial
|
||||||
|
conditions files used by the LII test is as follows:
|
||||||
|
|
||||||
|
(1) Run the LII test; the 'base' case should run to completion even if the
|
||||||
|
no_interp test fails.
|
||||||
|
|
||||||
|
(2) Copy the finidat_interp_dest.nc file from the 'base' case to the inputdata
|
||||||
|
space. Rename this to be similar to the name of the file pointed to in this
|
||||||
|
test's user_nl_ctsm file, but with a new creation date.
|
||||||
|
|
||||||
|
(3) Update this test's user_nl_ctsm file (in the appropriate testmods directory, or in
|
||||||
|
namelist_defaults if the test is using an out-of-the-box initial conditions file and it is
|
||||||
|
acceptable to update that file) to point to the new finidat file.
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LII(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="no_interp",
|
||||||
|
run_one_description="use_init_interp set to true",
|
||||||
|
run_two_description="use_init_interp set to false",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(), component="clm", contents="use_init_interp = .true."
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(), component="clm", contents="use_init_interp = .false."
|
||||||
|
)
|
||||||
72
cime_config/SystemTests/lii2finidatareas.py
Normal file
72
cime_config/SystemTests/lii2finidatareas.py
Normal file
@ -0,0 +1,72 @@
|
|||||||
|
"""Implementation of the LII2FINIDATAREAS test.
|
||||||
|
|
||||||
|
This is similar to the LII test, but tests init_interp with mode
|
||||||
|
'use_finidat_areas'.
|
||||||
|
|
||||||
|
As with the standard LII test, this must be used in a configuration for which we have a
|
||||||
|
compatible out-of-the-box finidat file (so that the run with use_init_interp =
|
||||||
|
.false. runs successfully).
|
||||||
|
|
||||||
|
It may not be totally necessary to have a system test covering this
|
||||||
|
init_interp_method: between unit tests and inline checks, we have quite
|
||||||
|
a bit of testing of this code. It's important to have at least one LII
|
||||||
|
test to make sure we're interpolating all the fields we're supposed to
|
||||||
|
interpolate, but we don't necessarily need a LII test with this mode of
|
||||||
|
operation as long as we have one with the general mode of operation.
|
||||||
|
|
||||||
|
However, this test is a good check that every point has a unique type
|
||||||
|
(because this mode of operation will fail if that's not the case); this
|
||||||
|
is something needed even for the 'general' init_interp method to work
|
||||||
|
correctly, but the 'general' mode won't catch problems in this regard.
|
||||||
|
|
||||||
|
One other reason why this test is useful is to cover the threading
|
||||||
|
directives in the set_single_match routine, since those aren't covered
|
||||||
|
by unit tests. So this test mod should be used in a test with threading.
|
||||||
|
|
||||||
|
To update the initial conditions (finidat) file for this test:
|
||||||
|
|
||||||
|
(1) Run the test; the 'base' case should run to completion even if the
|
||||||
|
no_interp test fails. (If the 'base' case fails, you may need to retry
|
||||||
|
with init_interp_method='general'.)
|
||||||
|
|
||||||
|
(2) Copy the finidat_interp_dest.nc file from the 'base' case to the inputdata
|
||||||
|
space. Rename this to be similar to the out-of-the-box finidat file
|
||||||
|
currently used by this test, but with a new creation date.
|
||||||
|
|
||||||
|
(3) Update namelist defaults to point to the new finidat file. If
|
||||||
|
updating the out-of-the-box file is not desired, then you could instead
|
||||||
|
point to this new finidat file with a user_nl_ctsm file in this testmod.
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
# We can import lii directly because the SystemTests directory has been
|
||||||
|
# added to sys.path.
|
||||||
|
#
|
||||||
|
# A cleaner and more general way to accomplish this would be: In cime:
|
||||||
|
# Rather than adding the SystemTests directory to sys.path and then
|
||||||
|
# importing an individual module from there: instead, allow each
|
||||||
|
# component to have a COMPNAME_pylib directory within its cime_config,
|
||||||
|
# and then have cime add each component's cime_config directory to
|
||||||
|
# sys.path and then do something like:
|
||||||
|
# import_module("COMPNAME_pylib.SystemTests.TESTNAME"). Then, for
|
||||||
|
# example, ctsm could access its own modules via "import
|
||||||
|
# ctsm_pylib.foo", or (in this case) "from ctsm_pylib.SystemTests.lii
|
||||||
|
# import LII".
|
||||||
|
from lii import LII
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LII2FINIDATAREAS(LII):
|
||||||
|
def __init__(self, case):
|
||||||
|
super(LII2FINIDATAREAS, self).__init__(case)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
super(LII2FINIDATAREAS, self)._case_one_setup()
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="init_interp_method = 'use_finidat_areas'",
|
||||||
|
)
|
||||||
438
cime_config/SystemTests/lilacsmoke.py
Normal file
438
cime_config/SystemTests/lilacsmoke.py
Normal file
@ -0,0 +1,438 @@
|
|||||||
|
"""Implementation of the CIME LILACSMOKE (LILAC smoke) test.
|
||||||
|
|
||||||
|
This is a CTSM-specific test. It tests the building and running of CTSM via LILAC. Compset
|
||||||
|
is ignored, but grid is important. Also, it's important that this test use the nuopc
|
||||||
|
driver, both for the sake of the build and for extracting some runtime settings. This test
|
||||||
|
should also use the lilac testmod (or a testmod that derives from it) in order to
|
||||||
|
establish the user_nl_ctsm file correctly.
|
||||||
|
|
||||||
|
Important directories under CASEROOT are:
|
||||||
|
- lilac_build: this contains the build and the runtime inputs for the lilac run
|
||||||
|
- lilac_atm_driver: this contains the build of the test driver as well as the run
|
||||||
|
directory in which the test is actually run
|
||||||
|
|
||||||
|
Note that namelists for this test are generated in the build phase; they are NOT
|
||||||
|
regenerated when the test is submitted / run. This means that, if you have made any
|
||||||
|
changes that will impact namelists, you will need to rebuild this test.
|
||||||
|
|
||||||
|
Note that this test is tied to a specific resolution (10x15) and has a hard-coded domain
|
||||||
|
file for this resolution: see the setting of lnd_domain_file below.
|
||||||
|
|
||||||
|
"""
|
||||||
|
|
||||||
|
import glob
|
||||||
|
import os
|
||||||
|
import shutil
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_common import SystemTestsCommon
|
||||||
|
from CIME.utils import run_cmd, run_cmd_no_fail, symlink_force, new_lid, safe_copy, append_testlog
|
||||||
|
from CIME.build import post_build
|
||||||
|
from CIME.test_status import (
|
||||||
|
NAMELIST_PHASE,
|
||||||
|
GENERATE_PHASE,
|
||||||
|
BASELINE_PHASE,
|
||||||
|
TEST_PASS_STATUS,
|
||||||
|
TEST_FAIL_STATUS,
|
||||||
|
)
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
_LILAC_RUNTIME_FILES = ["lnd_in", "lnd_modelio.nml", "lilac_in"]
|
||||||
|
|
||||||
|
|
||||||
|
class LILACSMOKE(SystemTestsCommon):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCommon.__init__(self, case)
|
||||||
|
|
||||||
|
def build_phase(self, sharedlib_only=False, model_only=False):
|
||||||
|
if not sharedlib_only:
|
||||||
|
lndroot = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
exeroot = self._case.get_value("EXEROOT")
|
||||||
|
build_dir = self._lilac_build_dir()
|
||||||
|
script_path = os.path.abspath(os.path.join(lndroot, "lilac", "build_ctsm"))
|
||||||
|
|
||||||
|
# We only run the initial build command if the build_dir doesn't exist
|
||||||
|
# yet. This is to support rebuilding the test case. (The first time through,
|
||||||
|
# the build_dir won't exist yet; subsequent times, it will already exist, so
|
||||||
|
# we skip to the rebuild command.)
|
||||||
|
if not os.path.isdir(build_dir):
|
||||||
|
machine = self._case.get_value("MACH")
|
||||||
|
compiler = self._case.get_value("COMPILER")
|
||||||
|
debug = self._case.get_value("DEBUG")
|
||||||
|
# It would be possible to do this testing via the python interface rather
|
||||||
|
# than through a separate subprocess. However, we do it through a
|
||||||
|
# subprocess in order to test the full build_ctsm script, including
|
||||||
|
# command-line parsing.
|
||||||
|
cmd = "{script_path} {build_dir} --machine {machine} --compiler {compiler}".format(
|
||||||
|
script_path=script_path, build_dir=build_dir, machine=machine, compiler=compiler
|
||||||
|
)
|
||||||
|
# It isn't straightforward to determine if pnetcdf is available on a
|
||||||
|
# machine. To keep things simple, always run without pnetcdf.
|
||||||
|
cmd += " --no-pnetcdf"
|
||||||
|
if debug:
|
||||||
|
cmd += " --build-debug"
|
||||||
|
self._run_build_cmd(cmd, exeroot, "build_ctsm.bldlog")
|
||||||
|
|
||||||
|
# We call the build script with --rebuild even for an initial build. This is
|
||||||
|
# so we make sure to test the code path for --rebuild. (This is also needed if
|
||||||
|
# the user rebuilds the test case, in which case this will be the only command
|
||||||
|
# run, since the build_dir will already exist.)
|
||||||
|
cmd = "{script_path} {build_dir} --rebuild".format(
|
||||||
|
script_path=script_path, build_dir=build_dir
|
||||||
|
)
|
||||||
|
self._run_build_cmd(cmd, exeroot, "rebuild_ctsm.bldlog")
|
||||||
|
|
||||||
|
self._build_atm_driver()
|
||||||
|
|
||||||
|
self._create_link_to_atm_driver()
|
||||||
|
|
||||||
|
self._create_runtime_inputs()
|
||||||
|
|
||||||
|
self._setup_atm_driver_rundir()
|
||||||
|
|
||||||
|
self._cmpgen_namelists()
|
||||||
|
|
||||||
|
# Setting logs=[] implies that we don't bother gzipping any of the build log
|
||||||
|
# files; that seems fine for these purposes (and it keeps the above code
|
||||||
|
# simpler).
|
||||||
|
post_build(self._case, logs=[], build_complete=True)
|
||||||
|
|
||||||
|
def _build_atm_driver(self):
|
||||||
|
caseroot = self._case.get_value("CASEROOT")
|
||||||
|
lndroot = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
blddir = os.path.join(caseroot, "lilac_atm_driver", "bld")
|
||||||
|
|
||||||
|
if not os.path.exists(blddir):
|
||||||
|
os.makedirs(blddir)
|
||||||
|
symlink_force(
|
||||||
|
os.path.join(lndroot, "lilac", "atm_driver", "Makefile"),
|
||||||
|
os.path.join(blddir, "Makefile"),
|
||||||
|
)
|
||||||
|
symlink_force(
|
||||||
|
os.path.join(lndroot, "lilac", "atm_driver", "atm_driver.F90"),
|
||||||
|
os.path.join(blddir, "atm_driver.F90"),
|
||||||
|
)
|
||||||
|
symlink_force(
|
||||||
|
os.path.join(self._lilac_build_dir(), "case", "Macros.make"),
|
||||||
|
os.path.join(blddir, "Macros.make"),
|
||||||
|
)
|
||||||
|
|
||||||
|
makevars = "COMPILER={compiler} DEBUG={debug} CTSM_MKFILE={ctsm_mkfile}".format(
|
||||||
|
compiler=self._case.get_value("COMPILER"),
|
||||||
|
debug=str(self._case.get_value("DEBUG")).upper(),
|
||||||
|
ctsm_mkfile=os.path.join(self._lilac_build_dir(), "ctsm.mk"),
|
||||||
|
)
|
||||||
|
makecmd = "make {makevars} atm_driver".format(makevars=makevars)
|
||||||
|
|
||||||
|
# Normally the user will source either ctsm_build_environment.sh or
|
||||||
|
# ctsm_build_environment.csh before building the atmosphere model. In the context
|
||||||
|
# of this test case, case.load_env does the equivalent.
|
||||||
|
self._case.load_env()
|
||||||
|
|
||||||
|
self._run_build_cmd(makecmd, blddir, "atm_driver.bldlog")
|
||||||
|
|
||||||
|
def _create_link_to_atm_driver(self):
|
||||||
|
caseroot = self._case.get_value("CASEROOT")
|
||||||
|
run_exe = (self._case.get_value("run_exe")).strip()
|
||||||
|
|
||||||
|
# Make a symlink to the atm_driver executable so that the case's run command finds
|
||||||
|
# it in the expected location
|
||||||
|
symlink_force(os.path.join(caseroot, "lilac_atm_driver", "bld", "atm_driver.exe"), run_exe)
|
||||||
|
|
||||||
|
def _create_runtime_inputs(self):
|
||||||
|
caseroot = self._case.get_value("CASEROOT")
|
||||||
|
runtime_inputs = self._runtime_inputs_dir()
|
||||||
|
|
||||||
|
# NOTE: *** this test is currently tied to this single 10x15 grid resolution ***
|
||||||
|
lnd_grid = self._case.get_value("LND_GRID")
|
||||||
|
expect(
|
||||||
|
lnd_grid == "10x15", "this test is currently tied to this single 10x15 grid resolution"
|
||||||
|
)
|
||||||
|
lnd_domain_file = os.path.join(
|
||||||
|
self._case.get_value("DIN_LOC_ROOT"),
|
||||||
|
"share",
|
||||||
|
"domains",
|
||||||
|
"domain.lnd.fv10x15_gx3v7.180321.nc",
|
||||||
|
)
|
||||||
|
|
||||||
|
# Cheat a bit here: Get the fsurdat file from the already-generated lnd_in file in
|
||||||
|
# the host test case - i.e., from the standard cime-based preview_namelists. But
|
||||||
|
# this isn't really a morally-objectionable cheat, because in the real workflow,
|
||||||
|
# we expect the user to identify fsurdat manually; in this testing situation, we
|
||||||
|
# need to come up with some way to replace this manual identification, so cheating
|
||||||
|
# feels acceptable.
|
||||||
|
self._case.create_namelists(component="lnd")
|
||||||
|
fsurdat = self._extract_var_from_namelist(
|
||||||
|
nl_filename=os.path.join(caseroot, "CaseDocs", "lnd_in"), varname="fsurdat"
|
||||||
|
)
|
||||||
|
|
||||||
|
self._fill_in_variables_in_file(
|
||||||
|
filepath=os.path.join(runtime_inputs, "ctsm.cfg"),
|
||||||
|
replacements={"lnd_domain_file": lnd_domain_file, "fsurdat": fsurdat},
|
||||||
|
)
|
||||||
|
|
||||||
|
# The user_nl_ctsm in the case directory is set up based on the standard testmods
|
||||||
|
# mechanism. We use that one in place of the standard user_nl_ctsm, since the one
|
||||||
|
# in the case directory may contain test-specific modifications.
|
||||||
|
shutil.copyfile(
|
||||||
|
src=os.path.join(caseroot, "user_nl_ctsm"),
|
||||||
|
dst=os.path.join(runtime_inputs, "user_nl_ctsm"),
|
||||||
|
)
|
||||||
|
|
||||||
|
script_to_run = os.path.join(runtime_inputs, "make_runtime_inputs")
|
||||||
|
self._run_build_cmd(
|
||||||
|
"{} --rundir {}".format(script_to_run, runtime_inputs),
|
||||||
|
runtime_inputs,
|
||||||
|
"make_runtime_inputs.log",
|
||||||
|
)
|
||||||
|
|
||||||
|
# In lilac_in, we intentionally use the land mesh file for both atm_mesh_filename
|
||||||
|
# and lnd_mesh_filename
|
||||||
|
lnd_mesh = self._case.get_value("LND_DOMAIN_MESH")
|
||||||
|
casename = self._case.get_value("CASE")
|
||||||
|
self._fill_in_variables_in_file(
|
||||||
|
filepath=os.path.join(runtime_inputs, "lilac_in"),
|
||||||
|
replacements={
|
||||||
|
"caseid": casename,
|
||||||
|
"atm_mesh_filename": lnd_mesh,
|
||||||
|
"lnd_mesh_filename": lnd_mesh,
|
||||||
|
"lilac_histfreq_option": "ndays",
|
||||||
|
},
|
||||||
|
placeholders={"caseid": "ctsm_lilac", "lilac_histfreq_option": "never"},
|
||||||
|
)
|
||||||
|
|
||||||
|
# We run download_input_data partly because it may be needed and partly to test
|
||||||
|
# this script.
|
||||||
|
script_to_run = os.path.join(runtime_inputs, "download_input_data")
|
||||||
|
self._run_build_cmd(
|
||||||
|
"{} --rundir {}".format(script_to_run, runtime_inputs),
|
||||||
|
runtime_inputs,
|
||||||
|
"download_input_data.log",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _setup_atm_driver_rundir(self):
|
||||||
|
"""Set up the directory from which we will actually do the run"""
|
||||||
|
lndroot = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
rundir = self._atm_driver_rundir()
|
||||||
|
|
||||||
|
if not os.path.exists(rundir):
|
||||||
|
os.makedirs(rundir)
|
||||||
|
shutil.copyfile(
|
||||||
|
src=os.path.join(lndroot, "lilac", "atm_driver", "atm_driver_in"),
|
||||||
|
dst=os.path.join(rundir, "atm_driver_in"),
|
||||||
|
)
|
||||||
|
|
||||||
|
# As elsewhere: assume the land variables also apply to the atmosphere
|
||||||
|
lnd_mesh = self._case.get_value("LND_DOMAIN_MESH")
|
||||||
|
lnd_nx = self._case.get_value("LND_NX")
|
||||||
|
lnd_ny = self._case.get_value("LND_NY")
|
||||||
|
expect(
|
||||||
|
self._case.get_value("STOP_OPTION") == "ndays",
|
||||||
|
"LILAC testing currently assumes STOP_OPTION of ndays, not {}".format(
|
||||||
|
self._case.get_value("STOP_OPTION")
|
||||||
|
),
|
||||||
|
)
|
||||||
|
stop_n = self._case.get_value("STOP_N")
|
||||||
|
casename = self._case.get_value("CASE")
|
||||||
|
self._fill_in_variables_in_file(
|
||||||
|
filepath=os.path.join(rundir, "atm_driver_in"),
|
||||||
|
replacements={
|
||||||
|
"caseid": casename,
|
||||||
|
"atm_mesh_file": lnd_mesh,
|
||||||
|
"atm_global_nx": str(lnd_nx),
|
||||||
|
"atm_global_ny": str(lnd_ny),
|
||||||
|
"atm_stop_day": str(stop_n + 1),
|
||||||
|
"atm_ndays_all_segs": str(stop_n),
|
||||||
|
},
|
||||||
|
)
|
||||||
|
|
||||||
|
for file_to_link in _LILAC_RUNTIME_FILES:
|
||||||
|
symlink_force(
|
||||||
|
os.path.join(self._runtime_inputs_dir(), file_to_link),
|
||||||
|
os.path.join(rundir, file_to_link),
|
||||||
|
)
|
||||||
|
|
||||||
|
init_generated_files_dir = os.path.join(rundir, "init_generated_files")
|
||||||
|
if not os.path.exists(init_generated_files_dir):
|
||||||
|
os.mkdir(init_generated_files_dir)
|
||||||
|
|
||||||
|
def _cmpgen_namelists(self):
|
||||||
|
"""Redoes the namelist comparison & generation with appropriate namelists
|
||||||
|
|
||||||
|
The standard namelist comparison & generation is done with the CaseDocs directory
|
||||||
|
from the test case. That isn't appropriate here, because those namelists aren't
|
||||||
|
actually used in this test. Instead, we want to compare & generate the namelists
|
||||||
|
used by the atm_driver-lilac-ctsm execution. Here, we do some file copies and then
|
||||||
|
re-call the namelist comparison & generation script in order to accomplish
|
||||||
|
this. This will overwrite the namelists generated earlier in the test, and will
|
||||||
|
also replace the results of the NLCOMP phase.
|
||||||
|
|
||||||
|
Note that we expect a failure in the NLCOMP phase that is run earlier in the test,
|
||||||
|
because that one will have compared the test's standard CaseDocs with the files
|
||||||
|
generated from here - and those two sets of namelists can be quite different.
|
||||||
|
"""
|
||||||
|
caseroot = self._case.get_value("CASEROOT")
|
||||||
|
casedocs = os.path.join(caseroot, "CaseDocs")
|
||||||
|
if os.path.exists(casedocs):
|
||||||
|
shutil.rmtree(casedocs)
|
||||||
|
os.makedirs(casedocs)
|
||||||
|
|
||||||
|
# case_cmpgen_namelists uses the existence of drv_in to decide whether namelists
|
||||||
|
# need to be regenerated. We do NOT want it to regenerate namelists, so we give it
|
||||||
|
# the file it wants.
|
||||||
|
with open(os.path.join(casedocs, "drv_in"), "a") as drv_in:
|
||||||
|
pass
|
||||||
|
|
||||||
|
for onefile in _LILAC_RUNTIME_FILES + ["atm_driver_in"]:
|
||||||
|
safe_copy(
|
||||||
|
os.path.join(self._atm_driver_rundir(), onefile), os.path.join(casedocs, onefile)
|
||||||
|
)
|
||||||
|
|
||||||
|
success = self._case.case_cmpgen_namelists()
|
||||||
|
# The setting of the NLCOMP phase status in case_cmpgen_namelists doesn't work
|
||||||
|
# here (probably because the test object has a saved version of the test status
|
||||||
|
# and so, when it goes to write the status of the build phase, it ends up
|
||||||
|
# overwriting whatever was set by case_cmpgen_namelists). So we need to set it
|
||||||
|
# here.
|
||||||
|
with self._test_status:
|
||||||
|
self._test_status.set_status(
|
||||||
|
NAMELIST_PHASE,
|
||||||
|
TEST_PASS_STATUS if success else TEST_FAIL_STATUS,
|
||||||
|
comments="(used lilac namelists)",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _extract_var_from_namelist(self, nl_filename, varname):
|
||||||
|
"""Tries to find a variable named varname in the given file; returns its value
|
||||||
|
|
||||||
|
If not found, aborts
|
||||||
|
"""
|
||||||
|
with open(nl_filename) as nl_file:
|
||||||
|
for line in nl_file:
|
||||||
|
match = re.search(r'^ *{} *= *[\'"]([^\'"]+)'.format(varname), line)
|
||||||
|
if match:
|
||||||
|
return match.group(1)
|
||||||
|
expect(False, "{} not found in {}".format(varname, nl_filename))
|
||||||
|
|
||||||
|
def _fill_in_variables_in_file(self, filepath, replacements, placeholders=None):
|
||||||
|
"""For the given file, make the given replacements
|
||||||
|
|
||||||
|
replacements should be a dictionary mapping variable names to their values
|
||||||
|
|
||||||
|
If placeholders is given, it should be a dictionary mapping some subset of
|
||||||
|
variable names to their placeholders. Anything not given here uses a placeholder
|
||||||
|
of 'FILL_THIS_IN'.
|
||||||
|
"""
|
||||||
|
if placeholders is None:
|
||||||
|
placeholders = {}
|
||||||
|
|
||||||
|
orig_filepath = "{}.orig".format(filepath)
|
||||||
|
if not os.path.exists(orig_filepath):
|
||||||
|
shutil.copyfile(src=filepath, dst=orig_filepath)
|
||||||
|
os.remove(filepath)
|
||||||
|
|
||||||
|
counts = dict.fromkeys(replacements, 0)
|
||||||
|
with open(orig_filepath) as orig_file:
|
||||||
|
with open(filepath, "w") as new_file:
|
||||||
|
for orig_line in orig_file:
|
||||||
|
line = orig_line
|
||||||
|
for varname in replacements:
|
||||||
|
if varname in placeholders:
|
||||||
|
this_placeholder = placeholders[varname]
|
||||||
|
else:
|
||||||
|
this_placeholder = "FILL_THIS_IN"
|
||||||
|
line, replacement_done = self._fill_in_variable(
|
||||||
|
line=line,
|
||||||
|
varname=varname,
|
||||||
|
value=replacements[varname],
|
||||||
|
placeholder=this_placeholder,
|
||||||
|
)
|
||||||
|
if replacement_done:
|
||||||
|
counts[varname] += 1
|
||||||
|
break
|
||||||
|
new_file.write(line)
|
||||||
|
|
||||||
|
for varname in counts:
|
||||||
|
expect(
|
||||||
|
counts[varname] > 0,
|
||||||
|
"Did not find any instances of <{}> to replace in {}".format(varname, filepath),
|
||||||
|
)
|
||||||
|
|
||||||
|
def _fill_in_variable(self, line, varname, value, placeholder):
|
||||||
|
"""Fill in a placeholder variable in a config or namelist file
|
||||||
|
|
||||||
|
Returns a tuple: (newline, replacement_done)
|
||||||
|
- newline is the line with the given placeholder replaced with the given value if this
|
||||||
|
line is for varname; otherwise returns line unchanged
|
||||||
|
- replacement_done is True if the replacement was done, otherwise False
|
||||||
|
"""
|
||||||
|
if re.search(r"^ *{} *=".format(varname), line):
|
||||||
|
expect(
|
||||||
|
placeholder in line,
|
||||||
|
"Placeholder to replace ({}) not found in <{}>".format(placeholder, line.strip()),
|
||||||
|
)
|
||||||
|
newline = line.replace(placeholder, value)
|
||||||
|
replacement_done = True
|
||||||
|
else:
|
||||||
|
newline = line
|
||||||
|
replacement_done = False
|
||||||
|
return (newline, replacement_done)
|
||||||
|
|
||||||
|
def _lilac_build_dir(self):
|
||||||
|
return os.path.join(self._case.get_value("CASEROOT"), "lilac_build")
|
||||||
|
|
||||||
|
def _runtime_inputs_dir(self):
|
||||||
|
return os.path.join(self._lilac_build_dir(), "runtime_inputs")
|
||||||
|
|
||||||
|
def _atm_driver_rundir(self):
|
||||||
|
return os.path.join(self._case.get_value("CASEROOT"), "lilac_atm_driver", "run")
|
||||||
|
|
||||||
|
@staticmethod
|
||||||
|
def _run_build_cmd(cmd, exeroot, logfile):
|
||||||
|
"""
|
||||||
|
Runs the given build command, with output to the given logfile
|
||||||
|
|
||||||
|
Args:
|
||||||
|
cmd: str (command to run)
|
||||||
|
exeroot: str (path to exeroot)
|
||||||
|
logfile: str (path to logfile)
|
||||||
|
"""
|
||||||
|
append_testlog(cmd)
|
||||||
|
run_cmd_no_fail(cmd, arg_stdout=logfile, combine_output=True, from_dir=exeroot)
|
||||||
|
with open(os.path.join(exeroot, logfile)) as lf:
|
||||||
|
append_testlog(lf.read())
|
||||||
|
|
||||||
|
def run_phase(self):
|
||||||
|
# This mimics a bit of what's done in the typical case.run. Note that
|
||||||
|
# case.get_mpirun_cmd creates a command that runs the executable given by
|
||||||
|
# case.run_exe. So it's important that (elsewhere in this test script) we create a
|
||||||
|
# link pointing from that to the atm_driver.exe executable.
|
||||||
|
lid = new_lid()
|
||||||
|
os.environ["OMP_NUM_THREADS"] = str(self._case.thread_count)
|
||||||
|
cmd = self._case.get_mpirun_cmd(allow_unresolved_envvars=False)
|
||||||
|
run_cmd_no_fail(cmd, from_dir=self._atm_driver_rundir())
|
||||||
|
|
||||||
|
self._link_to_output_files()
|
||||||
|
|
||||||
|
def _link_to_output_files(self):
|
||||||
|
"""Make links to the output files so that they appear in the directory expected by the test case
|
||||||
|
|
||||||
|
Note: We do the run from a different directory in order to ensure that the run
|
||||||
|
isn't using any of the files that are staged by the test case in the standard run
|
||||||
|
directory. But then we need to create these links afterwards for the sake of
|
||||||
|
baseline generation / comparison.
|
||||||
|
"""
|
||||||
|
casename = self._case.get_value("CASE")
|
||||||
|
rundir = self._case.get_value("RUNDIR")
|
||||||
|
pattern = "{}*.nc".format(casename)
|
||||||
|
|
||||||
|
# First remove any old files from the run directory
|
||||||
|
old_files = glob.glob(os.path.join(rundir, pattern))
|
||||||
|
for one_file in old_files:
|
||||||
|
os.remove(one_file)
|
||||||
|
|
||||||
|
# Now link to new files
|
||||||
|
output_files = glob.glob(os.path.join(self._atm_driver_rundir(), pattern))
|
||||||
|
for one_file in output_files:
|
||||||
|
file_basename = os.path.basename(one_file)
|
||||||
|
symlink_force(one_file, os.path.join(rundir, file_basename))
|
||||||
75
cime_config/SystemTests/lreprstruct.py
Normal file
75
cime_config/SystemTests/lreprstruct.py
Normal file
@ -0,0 +1,75 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME LREPRSTRUCT (Land Reproductive Structure) test.
|
||||||
|
|
||||||
|
This is a CTSM specific test: Verifies that we can allocate and use a crop reproductive
|
||||||
|
structure pool, and that answers are identical to a run with a single reproductive grain
|
||||||
|
pool. This is useful until we have tests that include AgSys, which will exercise this
|
||||||
|
capability more completely.
|
||||||
|
|
||||||
|
(1) do a run with a second grain pool and two reproductive structure pools, with all
|
||||||
|
allocation going to the second reproductive structure pool
|
||||||
|
(2) do a standard run only a single grain pool, but with no crop seed replenishment
|
||||||
|
|
||||||
|
The reason for having the new reproductive structure pools in the first case (rather than
|
||||||
|
the other way around) is that this results in having a few extra fields present in the
|
||||||
|
baselines.
|
||||||
|
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LREPRSTRUCT(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="grain1",
|
||||||
|
run_one_description="use a reproductive structure pool",
|
||||||
|
run_two_description="use a single grain pool",
|
||||||
|
ignore_fieldlist_diffs=True,
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
# We don't really need a second grain pool for this test, but we might as well do
|
||||||
|
# this to further exercise the looping over different reproductive components.
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="for_testing_use_second_grain_pool=.true.",
|
||||||
|
)
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="for_testing_use_repr_structure_pool=.true.",
|
||||||
|
)
|
||||||
|
|
||||||
|
# Replace any GRAIN outputs with the same outputs for REPRODUCTIVE1 and REPRODUCTIVE2
|
||||||
|
user_nl_clm_path = os.path.join(self._get_caseroot(), "user_nl_clm")
|
||||||
|
with open(user_nl_clm_path) as f:
|
||||||
|
user_nl_clm_text = f.read()
|
||||||
|
for grain_output in re.findall("GRAIN\w*", user_nl_clm_text):
|
||||||
|
user_nl_clm_text = user_nl_clm_text.replace(
|
||||||
|
grain_output,
|
||||||
|
grain_output.replace("GRAIN", "REPRODUCTIVE1")
|
||||||
|
+ "', '"
|
||||||
|
+ grain_output.replace("GRAIN", "REPRODUCTIVE2"),
|
||||||
|
)
|
||||||
|
with open(user_nl_clm_path, "w") as f:
|
||||||
|
f.write(user_nl_clm_text)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
# This is needed in the nearly-standard case to prevent grain from being used to
|
||||||
|
# replenish crop seed deficits, thus making grain act like the reproductive
|
||||||
|
# structure pools. (It wouldn't hurt to do this in case one as well, but it
|
||||||
|
# shouldn't be needed there, since we shouldn't have any grain there anyway.)
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="for_testing_no_crop_seed_replenishment=.true.",
|
||||||
|
)
|
||||||
43
cime_config/SystemTests/lvg.py
Normal file
43
cime_config/SystemTests/lvg.py
Normal file
@ -0,0 +1,43 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME LVG (Land Virtual Glacier) test.
|
||||||
|
|
||||||
|
This is a CLM specific test:
|
||||||
|
Verifies that adding virtual glacier columns doesn't change answers
|
||||||
|
(1) do a run with the standard set of virtual columns (suffix base)
|
||||||
|
(2) add virtual columns over Antarctica (suffix more_virtual)
|
||||||
|
|
||||||
|
This will only pass if there are no column or patch-level outputs in CLM's
|
||||||
|
history files.
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LVG(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="more_virtual",
|
||||||
|
run_one_description="standard set of virtual columns",
|
||||||
|
run_two_description="add virtual columns over Antarctica",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="glacier_region_behavior = 'single_at_atm_topo', 'virtual', 'virtual', 'multiple'",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="glacier_region_behavior = 'single_at_atm_topo', 'virtual', 'virtual', 'virtual'",
|
||||||
|
)
|
||||||
50
cime_config/SystemTests/lwiso.py
Normal file
50
cime_config/SystemTests/lwiso.py
Normal file
@ -0,0 +1,50 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME LWISO (Land Water Isotope) test.
|
||||||
|
|
||||||
|
This is a CTSM specific test:
|
||||||
|
Verifies turning on water isotopes doesn't change answers
|
||||||
|
(1) do a run with water isotopes on
|
||||||
|
(2) do a run with water isotopes off
|
||||||
|
|
||||||
|
The reason for having water isotopes on in the first case (rather than the other way
|
||||||
|
around) is that this results in having water isotope quantities present in the baselines.
|
||||||
|
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class LWISO(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="nowiso",
|
||||||
|
run_one_description="water isotopes on",
|
||||||
|
run_two_description="water isotopes off",
|
||||||
|
ignore_fieldlist_diffs=True,
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
# BUG(wjs, 2019-07-30, ESCOMP/ctsm#495) We currently can't turn on actual water
|
||||||
|
# isotopes in a multi-timestep test, so we're setting
|
||||||
|
# enable_water_tracer_consistency_checks rather than enable_water_isotopes;
|
||||||
|
# eventually, though, we should change this to the latter. (See
|
||||||
|
# <https://github.com/ESCOMP/ctsm/issues/495#issuecomment-516619853>.)
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="enable_water_tracer_consistency_checks=.true.",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="enable_water_tracer_consistency_checks=.false.",
|
||||||
|
)
|
||||||
156
cime_config/SystemTests/mksurfdataesmf.py
Normal file
156
cime_config/SystemTests/mksurfdataesmf.py
Normal file
@ -0,0 +1,156 @@
|
|||||||
|
"""
|
||||||
|
This test passes if mksurfdata_esmf generates an fsurdat (surface dataset)
|
||||||
|
and the CTSM completes a simulation with this fsurdat file.
|
||||||
|
|
||||||
|
We test res = '10x15' because it uses a lower-res topography file instead of
|
||||||
|
the 1-km topography raw dataset. The 1-km file causes the test to run out of
|
||||||
|
memory on cheyenne.
|
||||||
|
|
||||||
|
Currently casper complains that `git -C` is not a valid option.
|
||||||
|
I added -C to the `git describe` in gen_mksurfdata_namelist for this
|
||||||
|
system test to work.
|
||||||
|
"""
|
||||||
|
import os
|
||||||
|
import sys
|
||||||
|
import subprocess
|
||||||
|
from datetime import datetime
|
||||||
|
from CIME.SystemTests.system_tests_common import SystemTestsCommon
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class MKSURFDATAESMF(SystemTestsCommon):
|
||||||
|
def __init__(self, case):
|
||||||
|
"""
|
||||||
|
initialize an object interface to the SMS system test
|
||||||
|
"""
|
||||||
|
SystemTestsCommon.__init__(self, case)
|
||||||
|
|
||||||
|
# Paths and strings needed throughout
|
||||||
|
ctsm_root = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
self._tool_path = os.path.join(ctsm_root, "tools/mksurfdata_esmf")
|
||||||
|
self._tool_bld = os.path.join(self._get_caseroot(), "tool_bld")
|
||||||
|
time_stamp = datetime.today().strftime("%y%m%d")
|
||||||
|
self._res = "10x15" # see important comment in script's docstring
|
||||||
|
self._model_yr = "1850"
|
||||||
|
self._jobscript = os.path.join(
|
||||||
|
self._get_caseroot(), "mksurfdataesmf_test_jobscript_single.sh"
|
||||||
|
)
|
||||||
|
self._fsurdat_namelist = os.path.join(
|
||||||
|
self._get_caseroot(),
|
||||||
|
f"surfdata_{self._res}_hist_{self._model_yr}_78pfts_c{time_stamp}.namelist",
|
||||||
|
)
|
||||||
|
self._fsurdat_nc = os.path.join(
|
||||||
|
self._get_caseroot(),
|
||||||
|
f"surfdata_{self._res}_hist_{self._model_yr}_78pfts_c{time_stamp}.nc",
|
||||||
|
)
|
||||||
|
self._TestStatus_log_path = os.path.join(self._get_caseroot(), "TestStatus.log")
|
||||||
|
|
||||||
|
def build_phase(self, sharedlib_only=False, model_only=False):
|
||||||
|
"""
|
||||||
|
Build executable that will generate fsurdat
|
||||||
|
Generate namelist for generating fsurdat
|
||||||
|
Generate jobscript that runs executable
|
||||||
|
Modify user_nl_clm to point to the generated fsurdat
|
||||||
|
"""
|
||||||
|
# build_phase gets called twice:
|
||||||
|
# - once with sharedlib_only = True and
|
||||||
|
# - once with model_only = True
|
||||||
|
# Call the following steps only once during the test but do not skip
|
||||||
|
# if the test stops and gets restarted.
|
||||||
|
if sharedlib_only:
|
||||||
|
# Paths and strings
|
||||||
|
build_script_path = os.path.join(self._tool_path, "gen_mksurfdata_build")
|
||||||
|
nml_script_path = os.path.join(self._tool_path, "gen_mksurfdata_namelist")
|
||||||
|
gen_jobscript_path = os.path.join(self._tool_path, "gen_mksurfdata_jobscript_single")
|
||||||
|
gen_mksurfdata_namelist = f"{nml_script_path} --res {self._res} --start-year {self._model_yr} --end-year {self._model_yr}"
|
||||||
|
|
||||||
|
if not os.path.exists(nml_script_path):
|
||||||
|
sys.exit(f"ERROR The build naemlist script {nml_script_path} does NOT exist")
|
||||||
|
|
||||||
|
if not os.path.exists(gen_jobscript_path):
|
||||||
|
sys.exit(f"ERROR The jobscript script {gen_jobscript_path} does NOT exist")
|
||||||
|
|
||||||
|
gen_mksurfdata_jobscript = (
|
||||||
|
f"{gen_jobscript_path} --number-of-nodes 1 --tasks-per-node 64 --namelist-file "
|
||||||
|
+ f"{self._fsurdat_namelist} --bld-path {self._tool_bld} --jobscript-file {self._jobscript}"
|
||||||
|
)
|
||||||
|
if not os.path.exists(build_script_path):
|
||||||
|
sys.exit(f"ERROR The build script {build_script_path} does NOT exist")
|
||||||
|
|
||||||
|
# Rm tool_bld and build executable that will generate fsurdat
|
||||||
|
try:
|
||||||
|
subprocess.check_call(f"rm -rf {self._tool_bld}", shell=True)
|
||||||
|
except subprocess.CalledProcessError as e:
|
||||||
|
sys.exit(
|
||||||
|
f"{e} ERROR REMOVING {self._tool_bld}. DETAILS IN {self._TestStatus_log_path}"
|
||||||
|
)
|
||||||
|
try:
|
||||||
|
subprocess.check_call(f"{build_script_path} --blddir {self._tool_bld}", shell=True)
|
||||||
|
except subprocess.CalledProcessError as e:
|
||||||
|
print(f"build directory = {self._tool_bld}\n")
|
||||||
|
sys.exit(
|
||||||
|
f"{e} ERROR RUNNING {build_script_path} DETAILS IN {self._TestStatus_log_path}"
|
||||||
|
)
|
||||||
|
|
||||||
|
# Generate namelist for generating fsurdat (rm namelist if exists)
|
||||||
|
if os.path.exists(self._fsurdat_namelist):
|
||||||
|
os.remove(self._fsurdat_namelist)
|
||||||
|
try:
|
||||||
|
subprocess.check_call(gen_mksurfdata_namelist, shell=True)
|
||||||
|
except subprocess.CalledProcessError as e:
|
||||||
|
sys.exit(
|
||||||
|
f"{e} ERROR RUNNING {gen_mksurfdata_namelist}. DETAILS IN {self._TestStatus_log_path}"
|
||||||
|
)
|
||||||
|
|
||||||
|
# Generate jobscript that will run the executable
|
||||||
|
if os.path.exists(self._jobscript):
|
||||||
|
os.remove(self._jobscript)
|
||||||
|
try:
|
||||||
|
subprocess.check_call(gen_mksurfdata_jobscript, shell=True)
|
||||||
|
except subprocess.CalledProcessError as e:
|
||||||
|
sys.exit(
|
||||||
|
f"{e} ERROR RUNNING {gen_mksurfdata_jobscript}. DETAILS IN {self._TestStatus_log_path}"
|
||||||
|
)
|
||||||
|
# Change self._jobscript to an executable file
|
||||||
|
subprocess.check_call(f"chmod a+x {self._jobscript}", shell=True)
|
||||||
|
|
||||||
|
# Call this step only once even if the test stops and gets restarted.
|
||||||
|
if not os.path.exists(os.path.join(self._get_caseroot(), "done_MKSURFDATAESMF_setup.txt")):
|
||||||
|
# Modify user_nl_clm to point to the generated fsurdat
|
||||||
|
self._modify_user_nl()
|
||||||
|
with open("done_MKSURFDATAESMF_setup.txt", "w") as fp:
|
||||||
|
pass
|
||||||
|
|
||||||
|
self.build_indv(sharedlib_only=sharedlib_only, model_only=model_only)
|
||||||
|
|
||||||
|
def run_phase(self):
|
||||||
|
"""
|
||||||
|
Run executable to generate fsurdat
|
||||||
|
Submit CTSM run that uses fsurdat just generated
|
||||||
|
"""
|
||||||
|
|
||||||
|
# Run executable to generate fsurdat (rm fsurdat if exists)
|
||||||
|
if os.path.exists(self._fsurdat_nc):
|
||||||
|
os.remove(self._fsurdat_nc)
|
||||||
|
try:
|
||||||
|
subprocess.check_call(self._jobscript, shell=True)
|
||||||
|
except subprocess.CalledProcessError as e:
|
||||||
|
sys.exit(f"{e} ERROR RUNNING {self._jobscript}; details in {self._TestStatus_log_path}")
|
||||||
|
|
||||||
|
# Submit CTSM run that uses fsurdat just generated
|
||||||
|
self.run_indv()
|
||||||
|
|
||||||
|
def _modify_user_nl(self):
|
||||||
|
"""
|
||||||
|
Modify user_nl_clm to point to the generated fsurdat
|
||||||
|
"""
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="fsurdat = '{}'".format(self._fsurdat_nc)
|
||||||
|
+ "\n"
|
||||||
|
+ "convert_ocean_to_land = .true.",
|
||||||
|
)
|
||||||
444
cime_config/SystemTests/rxcropmaturity.py
Normal file
444
cime_config/SystemTests/rxcropmaturity.py
Normal file
@ -0,0 +1,444 @@
|
|||||||
|
"""
|
||||||
|
CTSM-specific test that first performs a GDD-generating run, then calls
|
||||||
|
Python code to generate the maturity requirement file. This is then used
|
||||||
|
in a sowing+maturity forced run, which finally is tested to ensure
|
||||||
|
correct behavior.
|
||||||
|
|
||||||
|
Currently only supports 0.9x1.25, 1.9x2.5, and 10x15 resolutions. Eventually,
|
||||||
|
this test should be able to generate its own files at whatever resolution it's
|
||||||
|
called at. Well, really, the ultimate goal would be to give CLM the files
|
||||||
|
at the original resolution (for GGCMI phase 3, 0.5°) and have the stream
|
||||||
|
code do the interpolation. However, that wouldn't act on harvest dates
|
||||||
|
(which are needed for generate_gdds.py). I could have Python interpolate
|
||||||
|
those, but this would cause a potential inconsistency.
|
||||||
|
"""
|
||||||
|
|
||||||
|
import os
|
||||||
|
import re
|
||||||
|
import systemtest_utils as stu
|
||||||
|
import subprocess
|
||||||
|
from CIME.SystemTests.system_tests_common import SystemTestsCommon
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
import shutil, glob
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class RXCROPMATURITY(SystemTestsCommon):
|
||||||
|
def __init__(self, case):
|
||||||
|
# initialize an object interface to the SMS system test
|
||||||
|
SystemTestsCommon.__init__(self, case)
|
||||||
|
|
||||||
|
# Ensure run length is at least 5 years. Minimum to produce one complete growing season (i.e., two complete calendar years) actually 4 years, but that only gets you 1 season usable for GDD generation, so you can't check for season-to-season consistency.
|
||||||
|
stop_n = self._case.get_value("STOP_N")
|
||||||
|
stop_option = self._case.get_value("STOP_OPTION")
|
||||||
|
stop_n_orig = stop_n
|
||||||
|
stop_option_orig = stop_option
|
||||||
|
if "nsecond" in stop_option:
|
||||||
|
stop_n /= 60
|
||||||
|
stop_option = "nminutes"
|
||||||
|
if "nminute" in stop_option:
|
||||||
|
stop_n /= 60
|
||||||
|
stop_option = "nhours"
|
||||||
|
if "nhour" in stop_option:
|
||||||
|
stop_n /= 24
|
||||||
|
stop_option = "ndays"
|
||||||
|
if "nday" in stop_option:
|
||||||
|
stop_n /= 365
|
||||||
|
stop_option = "nyears"
|
||||||
|
if "nmonth" in stop_option:
|
||||||
|
stop_n /= 12
|
||||||
|
stop_option = "nyears"
|
||||||
|
error_message = None
|
||||||
|
if "nyear" not in stop_option:
|
||||||
|
error_message = (
|
||||||
|
f"STOP_OPTION ({stop_option_orig}) must be nsecond(s), nminute(s), "
|
||||||
|
+ "nhour(s), nday(s), nmonth(s), or nyear(s)"
|
||||||
|
)
|
||||||
|
elif stop_n < 5:
|
||||||
|
error_message = (
|
||||||
|
"RXCROPMATURITY must be run for at least 5 years; you requested "
|
||||||
|
+ f"{stop_n_orig} {stop_option_orig[1:]}"
|
||||||
|
)
|
||||||
|
if error_message is not None:
|
||||||
|
logger.error(error_message)
|
||||||
|
raise RuntimeError(error_message)
|
||||||
|
|
||||||
|
# Get the number of complete years that will be run
|
||||||
|
self._run_Nyears = int(stop_n)
|
||||||
|
|
||||||
|
# Only allow RXCROPMATURITY to be called with test cropMonthOutput
|
||||||
|
casebaseid = self._case.get_value("CASEBASEID")
|
||||||
|
if casebaseid.split("-")[-1] != "cropMonthOutput":
|
||||||
|
error_message = (
|
||||||
|
"Only call RXCROPMATURITY with test cropMonthOutput "
|
||||||
|
+ "to avoid potentially huge sets of daily outputs."
|
||||||
|
)
|
||||||
|
logger.error(error_message)
|
||||||
|
raise RuntimeError(error_message)
|
||||||
|
|
||||||
|
# Get files with prescribed sowing and harvest dates
|
||||||
|
self._get_rx_dates()
|
||||||
|
|
||||||
|
# Which conda environment should we use?
|
||||||
|
self._get_conda_env()
|
||||||
|
|
||||||
|
def run_phase(self):
|
||||||
|
# Modeling this after the SSP test, we create a clone to be the case whose outputs we don't
|
||||||
|
# want to be saved as baseline.
|
||||||
|
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# (1) Set up GDD-generating run
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# Create clone to be GDD-Generating case
|
||||||
|
logger.info("RXCROPMATURITY log: cloning setup")
|
||||||
|
case_rxboth = self._case
|
||||||
|
caseroot = self._case.get_value("CASEROOT")
|
||||||
|
clone_path = f"{caseroot}.gddgen"
|
||||||
|
self._path_gddgen = clone_path
|
||||||
|
if os.path.exists(self._path_gddgen):
|
||||||
|
shutil.rmtree(self._path_gddgen)
|
||||||
|
logger.info("RXCROPMATURITY log: cloning")
|
||||||
|
case_gddgen = self._case.create_clone(clone_path, keepexe=True)
|
||||||
|
logger.info("RXCROPMATURITY log: done cloning")
|
||||||
|
|
||||||
|
os.chdir(self._path_gddgen)
|
||||||
|
self._set_active_case(case_gddgen)
|
||||||
|
|
||||||
|
# Set up stuff that applies to both tests
|
||||||
|
self._setup_all()
|
||||||
|
|
||||||
|
# Add stuff specific to GDD-Generating run
|
||||||
|
logger.info("RXCROPMATURITY log: modify user_nl files: generate GDDs")
|
||||||
|
self._append_to_user_nl_clm(
|
||||||
|
[
|
||||||
|
"generate_crop_gdds = .true.",
|
||||||
|
"use_mxmat = .false.",
|
||||||
|
" ",
|
||||||
|
"! (h2) Daily outputs for GDD generation and figure-making",
|
||||||
|
"hist_fincl3 = 'GDDACCUM', 'GDDHARV'",
|
||||||
|
"hist_nhtfrq(3) = -24",
|
||||||
|
"hist_mfilt(3) = 365",
|
||||||
|
"hist_type1d_pertape(3) = 'PFTS'",
|
||||||
|
"hist_dov2xy(3) = .false.",
|
||||||
|
]
|
||||||
|
)
|
||||||
|
|
||||||
|
# If flanduse_timeseries is defined, we need to make a static version for this test. This
|
||||||
|
# should have every crop in most of the world.
|
||||||
|
self._get_flanduse_timeseries_in(case_gddgen)
|
||||||
|
if self._flanduse_timeseries_in is not None:
|
||||||
|
|
||||||
|
# Download files from the server, if needed
|
||||||
|
case_gddgen.check_all_input_data()
|
||||||
|
|
||||||
|
# Make custom version of surface file
|
||||||
|
logger.info("RXCROPMATURITY log: run fsurdat_modifier")
|
||||||
|
self._run_fsurdat_modifier()
|
||||||
|
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# (2) Perform GDD-generating run and generate prescribed GDDs file
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
logger.info("RXCROPMATURITY log: Start GDD-Generating run")
|
||||||
|
|
||||||
|
# As per SSP test:
|
||||||
|
# "No history files expected, set suffix=None to avoid compare error"
|
||||||
|
# We *do* expect history files here, but anyway. This works.
|
||||||
|
self._skip_pnl = False
|
||||||
|
self.run_indv(suffix=None, st_archive=True)
|
||||||
|
|
||||||
|
self._run_generate_gdds(case_gddgen)
|
||||||
|
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# (3) Set up and perform Prescribed Calendars run
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
os.chdir(caseroot)
|
||||||
|
self._set_active_case(case_rxboth)
|
||||||
|
|
||||||
|
# Set up stuff that applies to both tests
|
||||||
|
self._setup_all()
|
||||||
|
|
||||||
|
# Add stuff specific to Prescribed Calendars run
|
||||||
|
logger.info("RXCROPMATURITY log: modify user_nl files: Prescribed Calendars")
|
||||||
|
self._append_to_user_nl_clm(
|
||||||
|
[
|
||||||
|
"generate_crop_gdds = .false.",
|
||||||
|
f"stream_fldFileName_cultivar_gdds = '{self._gdds_file}'",
|
||||||
|
]
|
||||||
|
)
|
||||||
|
|
||||||
|
self.run_indv()
|
||||||
|
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# (4) Check Prescribed Calendars run
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
logger.info("RXCROPMATURITY log: output check: Prescribed Calendars")
|
||||||
|
self._run_check_rxboth_run()
|
||||||
|
|
||||||
|
# Get sowing and harvest dates for this resolution.
|
||||||
|
def _get_rx_dates(self):
|
||||||
|
# Eventually, I want to remove these hard-coded resolutions so that this test can generate
|
||||||
|
# its own sowing and harvest date files at whatever resolution is requested.
|
||||||
|
lnd_grid = self._case.get_value("LND_GRID")
|
||||||
|
input_data_root = self._case.get_value("DIN_LOC_ROOT")
|
||||||
|
processed_crop_dates_dir = f"{input_data_root}/lnd/clm2/cropdata/calendars/processed"
|
||||||
|
if lnd_grid == "10x15":
|
||||||
|
self._sdatefile = os.path.join(
|
||||||
|
processed_crop_dates_dir,
|
||||||
|
"sdates_ggcmi_crop_calendar_phase3_v1.01_nninterp-f10_f10_mg37.2000-2000.20230330_165301.nc",
|
||||||
|
)
|
||||||
|
self._hdatefile = os.path.join(
|
||||||
|
processed_crop_dates_dir,
|
||||||
|
"hdates_ggcmi_crop_calendar_phase3_v1.01_nninterp-f10_f10_mg37.2000-2000.20230330_165301.nc",
|
||||||
|
)
|
||||||
|
elif lnd_grid == "1.9x2.5":
|
||||||
|
self._sdatefile = os.path.join(
|
||||||
|
processed_crop_dates_dir,
|
||||||
|
"sdates_ggcmi_crop_calendar_phase3_v1.01_nninterp-f19_g17.2000-2000.20230102_175625.nc",
|
||||||
|
)
|
||||||
|
self._hdatefile = os.path.join(
|
||||||
|
processed_crop_dates_dir,
|
||||||
|
"hdates_ggcmi_crop_calendar_phase3_v1.01_nninterp-f19_g17.2000-2000.20230102_175625.nc",
|
||||||
|
)
|
||||||
|
elif lnd_grid == "0.9x1.25":
|
||||||
|
self._sdatefile = os.path.join(
|
||||||
|
processed_crop_dates_dir,
|
||||||
|
"sdates_ggcmi_crop_calendar_phase3_v1.01_nninterp-f09_g17.2000-2000.20230520_134417.nc",
|
||||||
|
)
|
||||||
|
self._hdatefile = os.path.join(
|
||||||
|
processed_crop_dates_dir,
|
||||||
|
"hdates_ggcmi_crop_calendar_phase3_v1.01_nninterp-f09_g17.2000-2000.20230520_134418.nc",
|
||||||
|
)
|
||||||
|
else:
|
||||||
|
error_message = "ERROR: RXCROPMATURITY currently only supports 0.9x1.25, 1.9x2.5, and 10x15 resolutions"
|
||||||
|
logger.error(error_message)
|
||||||
|
raise RuntimeError(error_message)
|
||||||
|
|
||||||
|
# Ensure files exist
|
||||||
|
error_message = None
|
||||||
|
if not os.path.exists(self._sdatefile):
|
||||||
|
error_message = f"ERROR: Sowing date file not found: {self._sdatefile}"
|
||||||
|
elif not os.path.exists(self._hdatefile):
|
||||||
|
error_message = f"ERROR: Harvest date file not found: {self._sdatefile}"
|
||||||
|
if error_message is not None:
|
||||||
|
logger.error(error_message)
|
||||||
|
raise RuntimeError(error_message)
|
||||||
|
|
||||||
|
def _setup_all(self):
|
||||||
|
logger.info("RXCROPMATURITY log: _setup_all start")
|
||||||
|
|
||||||
|
# Get some info
|
||||||
|
self._ctsm_root = self._case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
run_startdate = self._case.get_value("RUN_STARTDATE")
|
||||||
|
self._run_startyear = int(run_startdate.split("-")[0])
|
||||||
|
|
||||||
|
# Set sowing dates file (and other crop calendar settings) for all runs
|
||||||
|
logger.info("RXCROPMATURITY log: modify user_nl files: all tests")
|
||||||
|
self._modify_user_nl_allruns()
|
||||||
|
logger.info("RXCROPMATURITY log: _setup_all done")
|
||||||
|
|
||||||
|
# Make a surface dataset that has every crop in every gridcell
|
||||||
|
def _run_fsurdat_modifier(self):
|
||||||
|
|
||||||
|
# fsurdat should be defined. Where is it?
|
||||||
|
self._fsurdat_in = None
|
||||||
|
with open(self._lnd_in_path, "r") as lnd_in:
|
||||||
|
for line in lnd_in:
|
||||||
|
fsurdat_in = re.match(r" *fsurdat *= *'(.*)'", line)
|
||||||
|
if fsurdat_in:
|
||||||
|
self._fsurdat_in = fsurdat_in.group(1)
|
||||||
|
break
|
||||||
|
if self._fsurdat_in is None:
|
||||||
|
error_message = "fsurdat not defined"
|
||||||
|
logger.error(error_message)
|
||||||
|
raise RuntimeError(error_message)
|
||||||
|
|
||||||
|
# Where we will save the fsurdat version for this test
|
||||||
|
path, ext = os.path.splitext(self._fsurdat_in)
|
||||||
|
dir_in, filename_in_noext = os.path.split(path)
|
||||||
|
self._fsurdat_out = os.path.join(
|
||||||
|
self._path_gddgen, f"{filename_in_noext}.all_crops_everywhere{ext}"
|
||||||
|
)
|
||||||
|
|
||||||
|
# Make fsurdat for this test, if not already done
|
||||||
|
if not os.path.exists(self._fsurdat_out):
|
||||||
|
tool_path = os.path.join(
|
||||||
|
self._ctsm_root,
|
||||||
|
"tools",
|
||||||
|
"modify_input_files",
|
||||||
|
"fsurdat_modifier",
|
||||||
|
)
|
||||||
|
|
||||||
|
# Create configuration file for fsurdat_modifier
|
||||||
|
self._cfg_path = os.path.join(
|
||||||
|
self._path_gddgen,
|
||||||
|
"modify_fsurdat_allcropseverywhere.cfg",
|
||||||
|
)
|
||||||
|
self._create_config_file_evenlysplitcrop()
|
||||||
|
|
||||||
|
command = f"python3 {tool_path} {self._cfg_path} "
|
||||||
|
stu.run_python_script(
|
||||||
|
self._get_caseroot(),
|
||||||
|
self._this_conda_env,
|
||||||
|
command,
|
||||||
|
tool_path,
|
||||||
|
)
|
||||||
|
|
||||||
|
# Modify namelist
|
||||||
|
logger.info("RXCROPMATURITY log: modify user_nl files: new fsurdat")
|
||||||
|
self._append_to_user_nl_clm(
|
||||||
|
[
|
||||||
|
"fsurdat = '{}'".format(self._fsurdat_out),
|
||||||
|
"do_transient_crops = .false.",
|
||||||
|
"flanduse_timeseries = ''",
|
||||||
|
"use_init_interp = .true.",
|
||||||
|
]
|
||||||
|
)
|
||||||
|
|
||||||
|
def _create_config_file_evenlysplitcrop(self):
|
||||||
|
"""
|
||||||
|
Open the new and the template .cfg files
|
||||||
|
Loop line by line through the template .cfg file
|
||||||
|
When string matches, replace that line's content
|
||||||
|
"""
|
||||||
|
cfg_template_path = os.path.join(
|
||||||
|
self._ctsm_root, "tools/modify_input_files/modify_fsurdat_template.cfg"
|
||||||
|
)
|
||||||
|
|
||||||
|
with open(self._cfg_path, "w", encoding="utf-8") as cfg_out:
|
||||||
|
# Copy template, replacing some lines
|
||||||
|
with open(cfg_template_path, "r", encoding="utf-8") as cfg_in:
|
||||||
|
for line in cfg_in:
|
||||||
|
if re.match(r" *evenly_split_cropland *=", line):
|
||||||
|
line = f"evenly_split_cropland = True"
|
||||||
|
elif re.match(r" *fsurdat_in *=", line):
|
||||||
|
line = f"fsurdat_in = {self._fsurdat_in}"
|
||||||
|
elif re.match(r" *fsurdat_out *=", line):
|
||||||
|
line = f"fsurdat_out = {self._fsurdat_out}"
|
||||||
|
elif re.match(r" *process_subgrid_section *=", line):
|
||||||
|
line = f"process_subgrid_section = True"
|
||||||
|
cfg_out.write(line)
|
||||||
|
|
||||||
|
# Add new lines
|
||||||
|
cfg_out.write("\n")
|
||||||
|
cfg_out.write("[modify_fsurdat_subgrid_fractions]\n")
|
||||||
|
cfg_out.write("PCT_CROP = 100.0\n")
|
||||||
|
cfg_out.write("PCT_NATVEG = 0.0\n")
|
||||||
|
cfg_out.write("PCT_GLACIER = 0.0\n")
|
||||||
|
cfg_out.write("PCT_WETLAND = 0.0\n")
|
||||||
|
cfg_out.write("PCT_LAKE = 0.0\n")
|
||||||
|
cfg_out.write("PCT_OCEAN = 0.0\n")
|
||||||
|
cfg_out.write("PCT_URBAN = 0.0 0.0 0.0\n")
|
||||||
|
|
||||||
|
def _run_check_rxboth_run(self):
|
||||||
|
|
||||||
|
output_dir = os.path.join(self._get_caseroot(), "run")
|
||||||
|
first_usable_year = self._run_startyear + 2
|
||||||
|
last_usable_year = self._run_startyear + self._run_Nyears - 2
|
||||||
|
|
||||||
|
tool_path = os.path.join(
|
||||||
|
self._ctsm_root, "python", "ctsm", "crop_calendars", "check_rxboth_run.py"
|
||||||
|
)
|
||||||
|
command = (
|
||||||
|
f"python3 {tool_path} "
|
||||||
|
+ f"--directory {output_dir} "
|
||||||
|
+ f"-y1 {first_usable_year} "
|
||||||
|
+ f"-yN {last_usable_year} "
|
||||||
|
+ f"--rx-sdates-file {self._sdatefile} "
|
||||||
|
+ f"--rx-gdds-file {self._gdds_file} "
|
||||||
|
)
|
||||||
|
stu.run_python_script(
|
||||||
|
self._get_caseroot(),
|
||||||
|
self._this_conda_env,
|
||||||
|
command,
|
||||||
|
tool_path,
|
||||||
|
)
|
||||||
|
|
||||||
|
def _modify_user_nl_allruns(self):
|
||||||
|
nl_additions = [
|
||||||
|
"stream_meshfile_cropcal = '{}'".format(self._case.get_value("LND_DOMAIN_MESH")),
|
||||||
|
"stream_fldFileName_swindow_start = '{}'".format(self._sdatefile),
|
||||||
|
"stream_fldFileName_swindow_end = '{}'".format(self._sdatefile),
|
||||||
|
"stream_year_first_cropcal = 2000",
|
||||||
|
"stream_year_last_cropcal = 2000",
|
||||||
|
"model_year_align_cropcal = 2000",
|
||||||
|
" ",
|
||||||
|
"! (h1) Annual outputs on sowing or harvest axis",
|
||||||
|
"hist_fincl2 = 'GRAINC_TO_FOOD_PERHARV', 'GRAINC_TO_FOOD_ANN', 'SDATES', 'SDATES_PERHARV', 'SYEARS_PERHARV', 'HDATES', 'GDDHARV_PERHARV', 'GDDACCUM_PERHARV', 'HUI_PERHARV', 'SOWING_REASON_PERHARV', 'HARVEST_REASON_PERHARV'",
|
||||||
|
"hist_nhtfrq(2) = 17520",
|
||||||
|
"hist_mfilt(2) = 999",
|
||||||
|
"hist_type1d_pertape(2) = 'PFTS'",
|
||||||
|
"hist_dov2xy(2) = .false.",
|
||||||
|
]
|
||||||
|
self._append_to_user_nl_clm(nl_additions)
|
||||||
|
|
||||||
|
def _run_generate_gdds(self, case_gddgen):
|
||||||
|
self._generate_gdds_dir = os.path.join(self._path_gddgen, "generate_gdds_out")
|
||||||
|
os.makedirs(self._generate_gdds_dir)
|
||||||
|
|
||||||
|
# Get arguments to generate_gdds.py
|
||||||
|
dout_sr = case_gddgen.get_value("DOUT_S_ROOT")
|
||||||
|
input_dir = os.path.join(dout_sr, "lnd", "hist")
|
||||||
|
first_season = self._run_startyear + 2
|
||||||
|
last_season = self._run_startyear + self._run_Nyears - 2
|
||||||
|
sdates_file = self._sdatefile
|
||||||
|
hdates_file = self._hdatefile
|
||||||
|
|
||||||
|
# It'd be much nicer to call generate_gdds.main(), but I can't import generate_gdds.
|
||||||
|
tool_path = os.path.join(
|
||||||
|
self._ctsm_root, "python", "ctsm", "crop_calendars", "generate_gdds.py"
|
||||||
|
)
|
||||||
|
command = " ".join(
|
||||||
|
[
|
||||||
|
f"python3 {tool_path}",
|
||||||
|
f"--input-dir {input_dir}",
|
||||||
|
f"--first-season {first_season}",
|
||||||
|
f"--last-season {last_season}",
|
||||||
|
f"--sdates-file {sdates_file}",
|
||||||
|
f"--hdates-file {hdates_file}",
|
||||||
|
f"--output-dir generate_gdds_out",
|
||||||
|
f"--skip-crops miscanthus,irrigated_miscanthus",
|
||||||
|
]
|
||||||
|
)
|
||||||
|
stu.run_python_script(
|
||||||
|
self._get_caseroot(),
|
||||||
|
self._this_conda_env,
|
||||||
|
command,
|
||||||
|
tool_path,
|
||||||
|
)
|
||||||
|
|
||||||
|
# Where were the prescribed maturity requirements saved?
|
||||||
|
generated_gdd_files = glob.glob(os.path.join(self._generate_gdds_dir, "gdds_*.nc"))
|
||||||
|
if len(generated_gdd_files) != 1:
|
||||||
|
error_message = f"ERROR: Expected one matching prescribed maturity requirements file; found {len(generated_gdd_files)}: {generated_gdd_files}"
|
||||||
|
logger.error(error_message)
|
||||||
|
raise RuntimeError(error_message)
|
||||||
|
self._gdds_file = generated_gdd_files[0]
|
||||||
|
|
||||||
|
def _get_conda_env(self):
|
||||||
|
conda_setup_commands = stu.cmds_to_setup_conda(self._get_caseroot())
|
||||||
|
|
||||||
|
# If npl conda environment is available, use that (It has dask, which
|
||||||
|
# enables chunking, which makes reading daily 1-degree netCDF files
|
||||||
|
# much more efficient.
|
||||||
|
if "npl " in os.popen(conda_setup_commands + "conda env list").read():
|
||||||
|
self._this_conda_env = "npl"
|
||||||
|
else:
|
||||||
|
self._this_conda_env = "ctsm_pylib"
|
||||||
|
|
||||||
|
def _append_to_user_nl_clm(self, additions):
|
||||||
|
caseroot = self._get_caseroot()
|
||||||
|
append_to_user_nl_files(caseroot=caseroot, component="clm", contents=additions)
|
||||||
|
|
||||||
|
# Is flanduse_timeseries defined? If so, where is it?
|
||||||
|
def _get_flanduse_timeseries_in(self, case):
|
||||||
|
case.create_namelists(component="lnd")
|
||||||
|
self._lnd_in_path = os.path.join(self._path_gddgen, "CaseDocs", "lnd_in")
|
||||||
|
self._flanduse_timeseries_in = None
|
||||||
|
with open(self._lnd_in_path, "r") as lnd_in:
|
||||||
|
for line in lnd_in:
|
||||||
|
flanduse_timeseries_in = re.match(r" *flanduse_timeseries *= *'(.*)'", line)
|
||||||
|
if flanduse_timeseries_in:
|
||||||
|
self._flanduse_timeseries_in = flanduse_timeseries_in.group(1)
|
||||||
|
break
|
||||||
43
cime_config/SystemTests/soilstructud.py
Normal file
43
cime_config/SystemTests/soilstructud.py
Normal file
@ -0,0 +1,43 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME SOILSTRUCTUD test.
|
||||||
|
|
||||||
|
This is a CLM specific test:
|
||||||
|
Verifies that a simulation that points to user_nl_ctsm containing
|
||||||
|
soil_layerstruct_userdefined_nlevsoi = 4
|
||||||
|
soil_layerstruct_userdefined = 0.1d0,0.3d0,0.6d0,1.0d0,1.0d0
|
||||||
|
gives bfb same results as one that points to user_nl_ctsm containing
|
||||||
|
soil_layerstruct_predefined = '4SL_2m'
|
||||||
|
|
||||||
|
"""
|
||||||
|
|
||||||
|
from CIME.SystemTests.system_tests_compare_two import SystemTestsCompareTwo
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.test_utils.user_nl_utils import append_to_user_nl_files
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class SOILSTRUCTUD(SystemTestsCompareTwo):
|
||||||
|
def __init__(self, case):
|
||||||
|
SystemTestsCompareTwo.__init__(
|
||||||
|
self,
|
||||||
|
case,
|
||||||
|
separate_builds=False,
|
||||||
|
run_two_suffix="4SL_2m",
|
||||||
|
run_one_description="soil_layerstruct_userdefined",
|
||||||
|
run_two_description="soil_layerstruct_predefined",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_one_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="soil_layerstruct_userdefined_nlevsoi = 4,soil_layerstruct_userdefined = 0.1d0,0.3d0,0.6d0,1.0d0,1.0d0",
|
||||||
|
)
|
||||||
|
|
||||||
|
def _case_two_setup(self):
|
||||||
|
append_to_user_nl_files(
|
||||||
|
caseroot=self._get_caseroot(),
|
||||||
|
component="clm",
|
||||||
|
contents="soil_layerstruct_predefined = '4SL_2m'",
|
||||||
|
)
|
||||||
113
cime_config/SystemTests/ssp.py
Normal file
113
cime_config/SystemTests/ssp.py
Normal file
@ -0,0 +1,113 @@
|
|||||||
|
"""
|
||||||
|
Implementation of the CIME SSP test. This class inherits from SystemTestsCommon
|
||||||
|
|
||||||
|
This is a CLM specific test:
|
||||||
|
Verifies that spinup works correctly
|
||||||
|
this test is only valid for CLM compsets with CLM45 or CLM50
|
||||||
|
(1) do an initial spin test
|
||||||
|
- set CLM_ACCELERATED_SPINUP to on
|
||||||
|
- write restarts at the end of the run, turn on short term archiving
|
||||||
|
- turn MOSART off
|
||||||
|
(2) do a hybrid non-spinup simulation run
|
||||||
|
- start from the restart files generated in (1)
|
||||||
|
- turn MOSART off
|
||||||
|
"""
|
||||||
|
from CIME.XML.standard_module_setup import *
|
||||||
|
from CIME.SystemTests.system_tests_common import SystemTestsCommon
|
||||||
|
import shutil, glob, os
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
|
||||||
|
class SSP(SystemTestsCommon):
|
||||||
|
def __init__(self, case):
|
||||||
|
"""
|
||||||
|
initialize an object interface to the SSP system test
|
||||||
|
"""
|
||||||
|
SystemTestsCommon.__init__(self, case)
|
||||||
|
rof = self._case.get_value("COMP_ROF")
|
||||||
|
expect(rof == "mosart", "ERROR: SSP test requires that ROF component be mosart")
|
||||||
|
|
||||||
|
def build_phase(self, sharedlib_only=False, model_only=False):
|
||||||
|
self._case.set_value("MOSART_MODE", "NULL")
|
||||||
|
self.build_indv(sharedlib_only=sharedlib_only, model_only=model_only)
|
||||||
|
|
||||||
|
def run_phase(self):
|
||||||
|
caseroot = self._case.get_value("CASEROOT")
|
||||||
|
orig_case = self._case
|
||||||
|
orig_casevar = self._case.get_value("CASE")
|
||||||
|
|
||||||
|
# clone the main case to create ref1
|
||||||
|
clone_path = "{}.ref1".format(caseroot)
|
||||||
|
if os.path.exists(clone_path):
|
||||||
|
shutil.rmtree(clone_path)
|
||||||
|
clone = self._case.create_clone(clone_path, keepexe=True)
|
||||||
|
|
||||||
|
# determine run lengths needed below
|
||||||
|
stop_nf = self._case.get_value("STOP_N")
|
||||||
|
stop_n1 = int(stop_nf / 2)
|
||||||
|
stop_n2 = stop_nf - stop_n1
|
||||||
|
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# (1) do a spinup run in the main case in the cloned ref case
|
||||||
|
# (short term archiving is on)
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
os.chdir(clone_path)
|
||||||
|
self._set_active_case(clone)
|
||||||
|
|
||||||
|
logger.info("startup: doing a {} {} 00000 seconds startup run".format(stop_n1, stop_nf))
|
||||||
|
logger.info(" writing restarts at end of run")
|
||||||
|
logger.info(" short term archiving is on ")
|
||||||
|
|
||||||
|
with clone:
|
||||||
|
clone.set_value("CLM_ACCELERATED_SPINUP", "on")
|
||||||
|
clone.set_value("STOP_N", stop_n1)
|
||||||
|
|
||||||
|
dout_sr = clone.get_value("DOUT_S_ROOT")
|
||||||
|
# No history files expected, set suffix=None to avoid compare error
|
||||||
|
self._skip_pnl = False
|
||||||
|
self.run_indv(suffix=None, st_archive=True)
|
||||||
|
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
# (2) do a hybrid, non-spinup run in orig_case
|
||||||
|
# -------------------------------------------------------------------
|
||||||
|
os.chdir(caseroot)
|
||||||
|
self._set_active_case(orig_case)
|
||||||
|
|
||||||
|
refdate = run_cmd_no_fail(
|
||||||
|
r'ls -1dt {}/rest/*-00000* | head -1 | sed "s/-00000.*//" | sed "s/^.*rest\///"'.format(
|
||||||
|
dout_sr
|
||||||
|
)
|
||||||
|
)
|
||||||
|
refsec = "00000"
|
||||||
|
|
||||||
|
# obtain rpointer files and necessary restart files from short term archiving directory
|
||||||
|
rundir = self._case.get_value("RUNDIR")
|
||||||
|
|
||||||
|
rest_path = os.path.join(dout_sr, "rest", "{}-{}".format(refdate, refsec))
|
||||||
|
|
||||||
|
for item in glob.glob("{}/*{}*".format(rest_path, refdate)):
|
||||||
|
link_name = os.path.join(rundir, os.path.basename(item))
|
||||||
|
if os.path.islink(link_name) and os.readlink(link_name) == item:
|
||||||
|
# Link is already set up correctly: do nothing
|
||||||
|
# (os.symlink raises an exception if you try to replace an
|
||||||
|
# existing file)
|
||||||
|
pass
|
||||||
|
else:
|
||||||
|
os.symlink(item, link_name)
|
||||||
|
|
||||||
|
for item in glob.glob("{}/*rpointer*".format(rest_path)):
|
||||||
|
shutil.copy(item, rundir)
|
||||||
|
|
||||||
|
self._case.set_value("CLM_ACCELERATED_SPINUP", "off")
|
||||||
|
self._case.set_value("RUN_TYPE", "hybrid")
|
||||||
|
self._case.set_value("GET_REFCASE", False)
|
||||||
|
self._case.set_value("RUN_REFCASE", "{}.ref1".format(orig_casevar))
|
||||||
|
|
||||||
|
self._case.set_value("RUN_REFDATE", refdate)
|
||||||
|
self._case.set_value("STOP_N", stop_n2)
|
||||||
|
self._case.set_value("DOUT_S", False)
|
||||||
|
self._case.flush()
|
||||||
|
|
||||||
|
# do the restart run (short term archiving is off)
|
||||||
|
self.run_indv()
|
||||||
86
cime_config/SystemTests/systemtest_utils.py
Normal file
86
cime_config/SystemTests/systemtest_utils.py
Normal file
@ -0,0 +1,86 @@
|
|||||||
|
"""
|
||||||
|
Reduce code duplication by putting reused functions here.
|
||||||
|
"""
|
||||||
|
|
||||||
|
import os, subprocess
|
||||||
|
|
||||||
|
|
||||||
|
def cmds_to_setup_conda(caseroot):
|
||||||
|
# Add specific commands needed on different machines to get conda available
|
||||||
|
# Use semicolon here since it's OK to fail
|
||||||
|
#
|
||||||
|
conda_setup_commands = ". " + caseroot + "/.env_mach_specific.sh; "
|
||||||
|
# Setting CONDA_PREFIX to empty ensures that this works even if called from
|
||||||
|
# a shell with a conda environment activated
|
||||||
|
conda_setup_commands += "CONDA_PREFIX=; "
|
||||||
|
# Execute the module unload/load when "which conda" fails
|
||||||
|
# eg on cheyenne
|
||||||
|
try:
|
||||||
|
subprocess.run("which conda", shell=True, check=True)
|
||||||
|
except subprocess.CalledProcessError:
|
||||||
|
# Remove python and add conda to environment for cheyennne
|
||||||
|
unload_python_load_conda = "module unload python; module load conda;"
|
||||||
|
# Make sure that adding this actually loads conda
|
||||||
|
subprocess.run(unload_python_load_conda + "which conda", shell=True, check=True)
|
||||||
|
# Save
|
||||||
|
conda_setup_commands += " " + unload_python_load_conda
|
||||||
|
|
||||||
|
return conda_setup_commands
|
||||||
|
|
||||||
|
|
||||||
|
def cmds_to_run_via_conda(caseroot, conda_run_call, command):
|
||||||
|
# Run in the specified conda environment
|
||||||
|
conda_setup_commands = cmds_to_setup_conda(caseroot)
|
||||||
|
conda_setup_commands += " " + conda_run_call
|
||||||
|
|
||||||
|
# Finish with Python script call
|
||||||
|
command = conda_setup_commands + " " + command
|
||||||
|
print(f"command: {command}")
|
||||||
|
|
||||||
|
return command
|
||||||
|
|
||||||
|
|
||||||
|
def run_python_script(caseroot, this_conda_env, command_in, tool_path):
|
||||||
|
|
||||||
|
# First, try with "conda run -n"
|
||||||
|
command = cmds_to_run_via_conda(caseroot, f"conda run -n {this_conda_env}", command_in)
|
||||||
|
|
||||||
|
# Run with logfile
|
||||||
|
tool_name = os.path.split(tool_path)[-1]
|
||||||
|
try:
|
||||||
|
with open(tool_name + ".log", "w") as f:
|
||||||
|
subprocess.run(
|
||||||
|
command, shell=True, check=True, text=True, stdout=f, stderr=subprocess.STDOUT
|
||||||
|
)
|
||||||
|
except subprocess.CalledProcessError as error:
|
||||||
|
# Retry with the original "conda activate" method
|
||||||
|
command = cmds_to_run_via_conda(
|
||||||
|
caseroot,
|
||||||
|
f"conda activate {this_conda_env} && ",
|
||||||
|
command_in,
|
||||||
|
)
|
||||||
|
try:
|
||||||
|
with open(tool_name + ".log2", "w") as f:
|
||||||
|
subprocess.run(
|
||||||
|
command, shell=True, check=True, text=True, stdout=f, stderr=subprocess.STDOUT
|
||||||
|
)
|
||||||
|
except subprocess.CalledProcessError as error:
|
||||||
|
print("ERROR while getting the conda environment and/or ")
|
||||||
|
print(f"running the {tool_name} tool: ")
|
||||||
|
print(f"(1) If your {this_conda_env} environment is out of date or you ")
|
||||||
|
print(f"have not created the {this_conda_env} environment, yet, you may ")
|
||||||
|
print("get past this error by running ./py_env_create ")
|
||||||
|
print("in your ctsm directory and trying this test again. ")
|
||||||
|
print("(2) If conda is not available, install and load conda, ")
|
||||||
|
print("run ./py_env_create, and then try this test again. ")
|
||||||
|
print("(3) If (1) and (2) are not the issue, then you may be ")
|
||||||
|
print(f"getting an error within {tool_name} itself. ")
|
||||||
|
print("Default error message: ")
|
||||||
|
print(error.output)
|
||||||
|
raise
|
||||||
|
except:
|
||||||
|
print(f"ERROR trying to run {tool_name}.")
|
||||||
|
raise
|
||||||
|
except:
|
||||||
|
print(f"ERROR trying to run {tool_name}.")
|
||||||
|
raise
|
||||||
197
cime_config/buildlib
Normal file
197
cime_config/buildlib
Normal file
@ -0,0 +1,197 @@
|
|||||||
|
#!/usr/bin/env python3
|
||||||
|
|
||||||
|
"""
|
||||||
|
build ctsm library
|
||||||
|
"""
|
||||||
|
import sys, os
|
||||||
|
|
||||||
|
_CIMEROOT = os.environ.get("CIMEROOT")
|
||||||
|
if _CIMEROOT is None:
|
||||||
|
raise SystemExit("ERROR: must set CIMEROOT environment variable")
|
||||||
|
|
||||||
|
_LIBDIR = os.path.join(_CIMEROOT, "CIME", "Tools")
|
||||||
|
sys.path.append(_LIBDIR)
|
||||||
|
|
||||||
|
from standard_script_setup import *
|
||||||
|
from CIME.buildlib import parse_input
|
||||||
|
from CIME.build import get_standard_makefile_args
|
||||||
|
from CIME.case import Case
|
||||||
|
from CIME.utils import run_cmd, expect
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
def _write_ctsm_mk(gmake, gmake_opts, makefile, exeroot, libroot):
|
||||||
|
"""Writes a ctsm.mk file in exeroot.
|
||||||
|
|
||||||
|
This file can be included by atmosphere model builds outside of cime.
|
||||||
|
"""
|
||||||
|
|
||||||
|
cime_output_file = os.path.join(exeroot, "cime_variables.mk")
|
||||||
|
# Set COMP_NAME=driver because some link flags are set differently when COMP_NAME=driver, and
|
||||||
|
# those are the ones we want here.
|
||||||
|
cmd = (
|
||||||
|
"{gmake} write_include_and_link_flags OUTPUT_FILE={cime_output_file} "
|
||||||
|
"COMP_NAME=driver {gmake_opts} -f {makefile} "
|
||||||
|
).format(
|
||||||
|
gmake=gmake,
|
||||||
|
cime_output_file=cime_output_file,
|
||||||
|
gmake_opts=gmake_opts,
|
||||||
|
makefile=makefile,
|
||||||
|
)
|
||||||
|
rc, out, err = run_cmd(cmd)
|
||||||
|
logger.info("%s: \n\n output:\n %s \n\n err:\n\n%s\n" % (cmd, out, err))
|
||||||
|
expect(rc == 0, "Command %s failed with rc=%s" % (cmd, rc))
|
||||||
|
|
||||||
|
ctsm_mk_path = os.path.join(exeroot, "ctsm.mk")
|
||||||
|
with open(ctsm_mk_path, "w") as ctsm_mk:
|
||||||
|
ctsm_mk.write(
|
||||||
|
"""
|
||||||
|
# ======================================================================
|
||||||
|
# Include this file to get makefile variables needed to include / link
|
||||||
|
# LILAC/CTSM in an atmosphere model's build
|
||||||
|
#
|
||||||
|
# Variables of interest are:
|
||||||
|
# - CTSM_INCLUDES: add this to the compilation line
|
||||||
|
# - CTSM_LIBS: add this to the link line
|
||||||
|
# ======================================================================
|
||||||
|
|
||||||
|
# ======================================================================
|
||||||
|
# The following CIME variables are meant for internal use, and generally
|
||||||
|
# should not be included directly in an atmosphere model's build.
|
||||||
|
# ======================================================================
|
||||||
|
|
||||||
|
"""
|
||||||
|
)
|
||||||
|
with open(cime_output_file) as infile:
|
||||||
|
ctsm_mk.write(infile.read())
|
||||||
|
|
||||||
|
ctsm_bld_dir = os.path.abspath(os.path.join(libroot, os.pardir))
|
||||||
|
with open(ctsm_mk_path, "a") as ctsm_mk:
|
||||||
|
ctsm_mk.write(
|
||||||
|
"""
|
||||||
|
# ======================================================================
|
||||||
|
# The following settings are meant for internal use, and generally
|
||||||
|
# should not be included directly in an atmosphere model's build.
|
||||||
|
# NOTE: clm library name and subdirectory will eventually need to
|
||||||
|
# be updated to ctsm.
|
||||||
|
# ======================================================================
|
||||||
|
|
||||||
|
CTSM_BLD_DIR = {ctsm_bld_dir}
|
||||||
|
CTSM_INC = $(CTSM_BLD_DIR)/clm/obj
|
||||||
|
|
||||||
|
# ======================================================================
|
||||||
|
# The following settings should be included in an atmosphere model's build.
|
||||||
|
# ======================================================================
|
||||||
|
|
||||||
|
CTSM_INCLUDES = $(CIME_ESMF_F90COMPILEPATHS) -I$(CIME_CSM_SHR_INCLUDE) -I$(CTSM_INC)
|
||||||
|
CTSM_LIBS = -L$(CTSM_BLD_DIR)/lib -lclm $(CIME_ULIBS) $(CIME_SLIBS) $(CIME_MLIBS) $(CIME_F90_LDFLAGS)
|
||||||
|
""".format(
|
||||||
|
ctsm_bld_dir=ctsm_bld_dir
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
def _main_func():
|
||||||
|
###############################################################################
|
||||||
|
|
||||||
|
caseroot, libroot, bldroot = parse_input(sys.argv)
|
||||||
|
|
||||||
|
with Case(caseroot) as case:
|
||||||
|
|
||||||
|
casetools = case.get_value("CASETOOLS")
|
||||||
|
makefile = os.path.join(casetools, "Makefile")
|
||||||
|
lnd_root = case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
gmake_j = case.get_value("GMAKE_J")
|
||||||
|
gmake = case.get_value("GMAKE")
|
||||||
|
gmake_opts = get_standard_makefile_args(case)
|
||||||
|
driver = case.get_value("COMP_INTERFACE").lower()
|
||||||
|
lilac_mode = case.get_value("LILAC_MODE")
|
||||||
|
|
||||||
|
if lilac_mode == "on":
|
||||||
|
driver = "lilac"
|
||||||
|
|
||||||
|
# -------------------------------------------------------
|
||||||
|
# create Filepath file
|
||||||
|
# -------------------------------------------------------
|
||||||
|
compname = case.get_value("COMP_LND")
|
||||||
|
filepath_file = os.path.join(bldroot, "Filepath")
|
||||||
|
if not os.path.isfile(filepath_file):
|
||||||
|
caseroot = case.get_value("CASEROOT")
|
||||||
|
expect(
|
||||||
|
((compname == "clm") or (compname == "ctsm")),
|
||||||
|
"Unexpected COMP_LND name: %s" % (compname),
|
||||||
|
)
|
||||||
|
|
||||||
|
paths = [
|
||||||
|
os.path.join(caseroot, "SourceMods", "src." + compname),
|
||||||
|
os.path.join(lnd_root, "src", "cpl", driver),
|
||||||
|
os.path.join(lnd_root, "src", "main"),
|
||||||
|
os.path.join(lnd_root, "src", "biogeophys"),
|
||||||
|
os.path.join(lnd_root, "src", "biogeochem"),
|
||||||
|
os.path.join(lnd_root, "src", "soilbiogeochem"),
|
||||||
|
os.path.join(lnd_root, "src", "dyn_subgrid"),
|
||||||
|
os.path.join(lnd_root, "src", "init_interp"),
|
||||||
|
os.path.join(lnd_root, "src", "self_tests"),
|
||||||
|
os.path.join(lnd_root, "src", "fates"),
|
||||||
|
os.path.join(lnd_root, "src", "fates", "main"),
|
||||||
|
os.path.join(lnd_root, "src", "fates", "biogeophys"),
|
||||||
|
os.path.join(lnd_root, "src", "fates", "biogeochem"),
|
||||||
|
os.path.join(lnd_root, "src", "fates", "fire"),
|
||||||
|
os.path.join(lnd_root, "src", "fates", "parteh"),
|
||||||
|
os.path.join(lnd_root, "src", "fates", "radiation"),
|
||||||
|
os.path.join(lnd_root, "src", "utils"),
|
||||||
|
os.path.join(lnd_root, "src", "cpl"),
|
||||||
|
os.path.join(lnd_root, "src", "cpl", "utils"),
|
||||||
|
]
|
||||||
|
|
||||||
|
if lilac_mode == "on":
|
||||||
|
paths.append(os.path.join(lnd_root, "lilac", "src"))
|
||||||
|
# If we want to build with a real river model (e.g., MOSART), we'll need
|
||||||
|
# to use its directories in place of stub_rof
|
||||||
|
paths.append(os.path.join(lnd_root, "lilac", "stub_rof"))
|
||||||
|
|
||||||
|
if driver == "lilac" or driver == "nuopc":
|
||||||
|
paths.append(os.path.join(lnd_root, "src", "cpl", "share_esmf"))
|
||||||
|
|
||||||
|
with open(filepath_file, "w") as filepath:
|
||||||
|
filepath.write("\n".join(paths))
|
||||||
|
filepath.write("\n")
|
||||||
|
|
||||||
|
# -------------------------------------------------------
|
||||||
|
# create the library in libroot
|
||||||
|
# -------------------------------------------------------
|
||||||
|
|
||||||
|
complib = os.path.join(libroot, "lib%s.a" % (compname))
|
||||||
|
|
||||||
|
cmd = "{} complib -j {} COMP_NAME={} COMPLIB={} -f {} {}".format(
|
||||||
|
gmake, gmake_j, compname, complib, makefile, gmake_opts
|
||||||
|
)
|
||||||
|
|
||||||
|
rc, out, err = run_cmd(cmd)
|
||||||
|
logger.info("%s: \n\n output:\n %s \n\n err:\n\n%s\n" % (cmd, out, err))
|
||||||
|
expect(rc == 0, "Command %s failed with rc=%s" % (cmd, rc))
|
||||||
|
|
||||||
|
# ------------------------------------------------------------------------
|
||||||
|
# for lilac usage, we need a file containing some Makefile variables (for the atmosphere model's build)
|
||||||
|
# ------------------------------------------------------------------------
|
||||||
|
|
||||||
|
if lilac_mode == "on":
|
||||||
|
_write_ctsm_mk(
|
||||||
|
gmake=gmake,
|
||||||
|
gmake_opts=gmake_opts,
|
||||||
|
makefile=makefile,
|
||||||
|
exeroot=case.get_value("EXEROOT"),
|
||||||
|
libroot=libroot,
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
|
||||||
|
if __name__ == "__main__":
|
||||||
|
logger.warning(
|
||||||
|
"WARNING: buildlib is being called as a program rather than a subroutine as "
|
||||||
|
+ "it is expected to be in the CESM context"
|
||||||
|
)
|
||||||
|
_main_func()
|
||||||
418
cime_config/buildnml
Normal file
418
cime_config/buildnml
Normal file
@ -0,0 +1,418 @@
|
|||||||
|
#!/usr/bin/env python3
|
||||||
|
|
||||||
|
"""
|
||||||
|
CTSM namelist creator
|
||||||
|
"""
|
||||||
|
import sys, os, shutil, re
|
||||||
|
|
||||||
|
_CIMEROOT = os.environ.get("CIMEROOT")
|
||||||
|
if _CIMEROOT is None:
|
||||||
|
raise SystemExit("ERROR: must set CIMEROOT environment variable")
|
||||||
|
|
||||||
|
_LIBDIR = os.path.join(_CIMEROOT, "CIME", "Tools")
|
||||||
|
sys.path.append(_LIBDIR)
|
||||||
|
|
||||||
|
from standard_script_setup import *
|
||||||
|
from CIME.buildnml import create_namelist_infile, parse_input
|
||||||
|
from CIME.case import Case
|
||||||
|
from CIME.utils import expect, run_cmd
|
||||||
|
|
||||||
|
logger = logging.getLogger(__name__)
|
||||||
|
|
||||||
|
_config_cache_template = """
|
||||||
|
<?xml version="1.0"?>
|
||||||
|
<config_definition>
|
||||||
|
<commandline></commandline>
|
||||||
|
<entry id="phys" value="{clm_phys}" list="" valid_values="clm4_5,clm5_0,clm5_1,clm6_0">Specifies CTSM physics</entry>
|
||||||
|
</config_definition>
|
||||||
|
"""
|
||||||
|
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
def buildnml(case, caseroot, compname):
|
||||||
|
###############################################################################
|
||||||
|
"""Build the CTSM namelist"""
|
||||||
|
|
||||||
|
# Build the component namelist
|
||||||
|
if compname != "ctsm" and compname != "clm":
|
||||||
|
raise AttributeError
|
||||||
|
|
||||||
|
lnd_root = case.get_value("COMP_ROOT_DIR_LND")
|
||||||
|
din_loc_root = case.get_value("DIN_LOC_ROOT")
|
||||||
|
configuration = case.get_value("CLM_CONFIGURATION")
|
||||||
|
structure = case.get_value("CLM_STRUCTURE")
|
||||||
|
ccsm_co2_ppmv = case.get_value("CCSM_CO2_PPMV")
|
||||||
|
casename = case.get_value("CASE")
|
||||||
|
clm_co2_type = case.get_value("CLM_CO2_TYPE")
|
||||||
|
clm_namelist_opts = case.get_value("CLM_NAMELIST_OPTS")
|
||||||
|
clm_bldnml_opts = case.get_value("CLM_BLDNML_OPTS")
|
||||||
|
clm_nml_use_case = case.get_value("CLM_NML_USE_CASE")
|
||||||
|
clm_force_coldstart = case.get_value("CLM_FORCE_COLDSTART")
|
||||||
|
lnd_tuning_mode = case.get_value("LND_TUNING_MODE")
|
||||||
|
clm_accelerated_spinup = case.get_value("CLM_ACCELERATED_SPINUP")
|
||||||
|
comp_atm = case.get_value("COMP_ATM")
|
||||||
|
lnd_grid = case.get_value("LND_GRID")
|
||||||
|
ninst_lnd = case.get_value("NINST_LND")
|
||||||
|
rundir = case.get_value("RUNDIR")
|
||||||
|
run_type = case.get_value("RUN_TYPE")
|
||||||
|
run_startdate = case.get_value("RUN_STARTDATE")
|
||||||
|
run_refcase = case.get_value("RUN_REFCASE")
|
||||||
|
run_refdate = case.get_value("RUN_REFDATE")
|
||||||
|
run_reftod = case.get_value("RUN_REFTOD")
|
||||||
|
glc_nec = case.get_value("GLC_NEC")
|
||||||
|
glc_use_antarctica = case.get_value("GLC_USE_ANTARCTICA")
|
||||||
|
mask = case.get_value("MASK_GRID")
|
||||||
|
driver = case.get_value("COMP_INTERFACE").lower()
|
||||||
|
|
||||||
|
# Create init_generated_files directory if not there
|
||||||
|
newdir = os.path.join(rundir, "init_generated_files")
|
||||||
|
if not os.path.exists(newdir):
|
||||||
|
os.mkdir(newdir)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# Error checking
|
||||||
|
# -----------------------------------------------------
|
||||||
|
if clm_bldnml_opts.find("-namelist") >= 0:
|
||||||
|
expect(
|
||||||
|
False,
|
||||||
|
"The -namelist option is NOT allowed to be part of CLM_BLDNML_OPTS, "
|
||||||
|
+ "use the CLM_NAMELIST_OPTS option or add namelist items to user_nl_clm instead ",
|
||||||
|
)
|
||||||
|
#
|
||||||
|
# Warnings for land tuning modes
|
||||||
|
#
|
||||||
|
closest_tuning = {
|
||||||
|
"clm4_5_1PT": "clm4_5_CRUv7",
|
||||||
|
"clm4_5_QIAN": "clm4_5_CRUv7",
|
||||||
|
"clm4_5_NLDAS2": "clm4_5_CRUv7",
|
||||||
|
"clm4_5_ERA5": "clm4_5_CRUv7",
|
||||||
|
"clm5_0_1PT": "clm5_0_GSWP3v1",
|
||||||
|
"clm5_0_QIAN": "clm5_0_GSWP3v1",
|
||||||
|
"clm5_0_NLDAS2": "clm5_0_GSWP3v1",
|
||||||
|
"clm5_0_ERA5": "clm5_0_GSWP3v1",
|
||||||
|
"clm5_1_1PT": "clm5_1_GSWP3v1",
|
||||||
|
"clm5_1_QIAN": "clm5_1_GSWP3v1",
|
||||||
|
"clm5_1_NLDAS2": "clm5_1_GSWP3v1",
|
||||||
|
"clm5_1_ERA5": "clm5_1_GSWP3v1",
|
||||||
|
"clm5_1_CRUv7": "clm5_1_GSWP3v1",
|
||||||
|
"clm6_0_1PT": "clm6_0_GSWP3v1",
|
||||||
|
"clm6_0_QIAN": "clm6_0_GSWP3v1",
|
||||||
|
"clm6_0_NLDAS2": "clm6_0_GSWP3v1",
|
||||||
|
"clm6_0_ERA5": "clm6_0_GSWP3v1",
|
||||||
|
"clm6_0_CRUv7": "clm6_0_GSWP3v1",
|
||||||
|
}
|
||||||
|
for mode, closest in closest_tuning.items():
|
||||||
|
if lnd_tuning_mode == mode:
|
||||||
|
logger.warning(
|
||||||
|
"IMPORTANT NOTE: LND_TUNING_MODE is "
|
||||||
|
+ lnd_tuning_mode
|
||||||
|
+ " which does NOT have tuned settings, so using the closest option which is "
|
||||||
|
+ closest
|
||||||
|
)
|
||||||
|
logger.warning(
|
||||||
|
" : To suppress this message explicitly set LND_TUNING_MODE="
|
||||||
|
+ lnd_tuning_mode
|
||||||
|
+ " for your case"
|
||||||
|
)
|
||||||
|
lnd_tuning_mode = closest
|
||||||
|
|
||||||
|
# CAM4 and CAM5 options are based on cam6 tuning
|
||||||
|
# (other than the Zender dust emission soil eroditability file which is specific
|
||||||
|
# to the CAM version)
|
||||||
|
tuning_based_on = {
|
||||||
|
"clm6_0_GSWP3v1": "clm5_0_GSWP3v1",
|
||||||
|
"clm5_1_GSWP3v1": "clm5_0_GSWP3v1",
|
||||||
|
"clm6_0_cam6.0": "clm5_0_cam6.0",
|
||||||
|
"clm6_0_cam5.0": "clm5_0_cam6.0",
|
||||||
|
"clm6_0_cam4.0": "clm5_0_cam6.0",
|
||||||
|
"clm5_1_cam6.0": "clm5_0_cam6.0",
|
||||||
|
"clm5_1_cam5.0": "clm5_0_cam6.0",
|
||||||
|
"clm5_1_cam4.0": "clm5_0_cam6.0",
|
||||||
|
"clm5_0_cam5.0": "clm5_0_cam6.0",
|
||||||
|
"clm5_0_cam4.0": "clm5_0_cam6.0",
|
||||||
|
"clm4_5_cam6.0": "clm5_0_cam6.0",
|
||||||
|
"clm4_5_cam5.0": "clm5_0_cam6.0",
|
||||||
|
"clm4_5_cam4.0": "clm5_0_cam6.0",
|
||||||
|
}
|
||||||
|
for mode, based_on in tuning_based_on.items():
|
||||||
|
if lnd_tuning_mode == mode:
|
||||||
|
logger.warning(
|
||||||
|
"NOTE: LND_TUNING_MODE is "
|
||||||
|
+ lnd_tuning_mode
|
||||||
|
+ " which is NOT tuned, but is based on "
|
||||||
|
+ based_on
|
||||||
|
)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# Set ctsmconf
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
ctsmconf = os.path.join(caseroot, "Buildconf", compname + "conf")
|
||||||
|
if not os.path.isdir(ctsmconf):
|
||||||
|
os.makedirs(ctsmconf)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# Create config_cache.xml file
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
# Note that build-namelist utilizes the contents of the config_cache.xml file in
|
||||||
|
# the namelist_defaults.xml file to obtain namelist variables
|
||||||
|
|
||||||
|
clm_phys = case.get_value("CLM_PHYSICS_VERSION")
|
||||||
|
|
||||||
|
config_cache_text = _config_cache_template.format(clm_phys=clm_phys)
|
||||||
|
config_cache_path = os.path.join(caseroot, "Buildconf", compname + "conf", "config_cache.xml")
|
||||||
|
with open(config_cache_path, "w") as config_cache_file:
|
||||||
|
config_cache_file.write(config_cache_text)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# Determine input arguments into build-namelist
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
startfile_type = "finidat"
|
||||||
|
start_type = "default"
|
||||||
|
if run_type == "hybrid":
|
||||||
|
start_type = "startup"
|
||||||
|
elif run_type != "startup":
|
||||||
|
start_type = run_type
|
||||||
|
|
||||||
|
if run_type == "branch":
|
||||||
|
startfile_type = "nrevsn"
|
||||||
|
if clm_force_coldstart == "on":
|
||||||
|
clm_force_coldstart = "off"
|
||||||
|
logger.warning(
|
||||||
|
"WARNING: You've turned on CLM_FORCE_COLDSTART for a branch run_type, which is a contradiction, the coldstart will be ignored\n"
|
||||||
|
+ " turn off CLM_FORCE_COLDSTART, or set RUN_TYPE=hybrid to get rid of this warning"
|
||||||
|
)
|
||||||
|
|
||||||
|
if clm_force_coldstart == "on":
|
||||||
|
logger.warning("WARNING: CLM is starting up from a cold state")
|
||||||
|
start_type = "cold"
|
||||||
|
|
||||||
|
if lnd_grid == "T31":
|
||||||
|
lnd_grid = "48x96"
|
||||||
|
if lnd_grid == "T42":
|
||||||
|
lnd_grid = "64x128"
|
||||||
|
if lnd_grid == "T85":
|
||||||
|
lnd_grid = "128x256"
|
||||||
|
if lnd_grid == "T341":
|
||||||
|
lnd_grid = "512x1024"
|
||||||
|
|
||||||
|
clmusr = ""
|
||||||
|
if lnd_grid == "CLM_USRDAT":
|
||||||
|
clm_usrdat_name = case.get_value("CLM_USRDAT_NAME")
|
||||||
|
clmusr = " -clm_usr_name %s " % clm_usrdat_name
|
||||||
|
# Write warning about initial condition data
|
||||||
|
if "NEON" in clm_usrdat_name and clm_force_coldstart == "off":
|
||||||
|
if ("_transient" in clm_nml_use_case) and (
|
||||||
|
re.fullmatch(r"\w\w\w\w\.transient", casename) is None
|
||||||
|
or clm_usrdat_name is "NEON.PRISM"
|
||||||
|
):
|
||||||
|
logger.warning(
|
||||||
|
"WARNING: Do you have appropriate initial conditions for this simulation?"
|
||||||
|
+ " Check that the finidat file used in the lnd_in namelist is appropriately spunup for your case"
|
||||||
|
)
|
||||||
|
|
||||||
|
if comp_atm != "datm":
|
||||||
|
nomeg = "-no-megan"
|
||||||
|
else:
|
||||||
|
nomeg = ""
|
||||||
|
|
||||||
|
if glc_use_antarctica is None:
|
||||||
|
# This is the case for compsets with SGLC where the GLC_USE_ANTARCTICA xml
|
||||||
|
# variable isn't defined
|
||||||
|
glc_use_antarctica_flag = ""
|
||||||
|
elif isinstance(glc_use_antarctica, bool):
|
||||||
|
if glc_use_antarctica:
|
||||||
|
glc_use_antarctica_flag = "-glc_use_antarctica"
|
||||||
|
else:
|
||||||
|
glc_use_antarctica_flag = ""
|
||||||
|
else:
|
||||||
|
expect(
|
||||||
|
False,
|
||||||
|
"Unexpected value for GLC_USE_ANTARCTICA: {}".format(glc_use_antarctica),
|
||||||
|
)
|
||||||
|
|
||||||
|
if clm_nml_use_case != "UNSET":
|
||||||
|
usecase = "-use_case %s" % clm_nml_use_case
|
||||||
|
else:
|
||||||
|
usecase = ""
|
||||||
|
|
||||||
|
if (mask != "null") and (mask != "UNSET"):
|
||||||
|
gridmask = "-mask %s" % mask
|
||||||
|
else:
|
||||||
|
gridmask = ""
|
||||||
|
|
||||||
|
start_ymd = run_startdate.replace("-", "")
|
||||||
|
|
||||||
|
if ("-01-01" in run_startdate) or ("-09-01" in run_startdate):
|
||||||
|
ignore = "-ignore_ic_year"
|
||||||
|
else:
|
||||||
|
ignore = "-ignore_ic_date"
|
||||||
|
|
||||||
|
tuning = "-lnd_tuning_mode %s " % lnd_tuning_mode
|
||||||
|
|
||||||
|
spinup = "-clm_accelerated_spinup %s " % clm_accelerated_spinup
|
||||||
|
|
||||||
|
infile = os.path.join(ctsmconf, "namelist")
|
||||||
|
|
||||||
|
inputdata_file = os.path.join(caseroot, "Buildconf", "ctsm.input_data_list")
|
||||||
|
|
||||||
|
if driver == "nuopc":
|
||||||
|
lndfrac_setting = " "
|
||||||
|
else:
|
||||||
|
lnd_domain_path = case.get_value("LND_DOMAIN_PATH")
|
||||||
|
lnd_domain_file = case.get_value("LND_DOMAIN_FILE")
|
||||||
|
lndfrac_file = os.path.join(lnd_domain_path, lnd_domain_file)
|
||||||
|
lndfrac_setting = "-lnd_frac " + lndfrac_file
|
||||||
|
|
||||||
|
config_cache_file = os.path.join(caseroot, "Buildconf", compname + "conf", "config_cache.xml")
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# Clear out old data
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
if os.path.exists(inputdata_file):
|
||||||
|
os.remove(inputdata_file)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# loop over instances
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
ninst = int(ninst_lnd)
|
||||||
|
for inst_counter in range(1, ninst + 1):
|
||||||
|
|
||||||
|
# determine instance string
|
||||||
|
inst_string = ""
|
||||||
|
if ninst > 1:
|
||||||
|
inst_string = "_" + "%04d" % inst_counter
|
||||||
|
|
||||||
|
# If multi-instance case does not have restart file, use
|
||||||
|
# single-case restart for each instance
|
||||||
|
rpointer = "rpointer.lnd"
|
||||||
|
if os.path.isfile(os.path.join(rundir, rpointer)) and (
|
||||||
|
not os.path.isfile(os.path.join(rundir, rpointer + inst_string))
|
||||||
|
):
|
||||||
|
shutil.copy(
|
||||||
|
os.path.join(rundir, rpointer),
|
||||||
|
os.path.join(rundir, rpointer + inst_string),
|
||||||
|
)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# call build-namelist
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
if run_type == "hybrid" or run_type == "branch":
|
||||||
|
compnames = ["clm4", "clm5", "clm2"]
|
||||||
|
for comp in compnames:
|
||||||
|
clm_startfile = "%s.%s%s.r.%s-%s.nc" % (
|
||||||
|
run_refcase,
|
||||||
|
comp,
|
||||||
|
inst_string,
|
||||||
|
run_refdate,
|
||||||
|
run_reftod,
|
||||||
|
)
|
||||||
|
if os.path.exists(os.path.join(rundir, clm_startfile)):
|
||||||
|
break
|
||||||
|
else:
|
||||||
|
clm_startfile = "%s.%s.r.%s-%s.nc" % (
|
||||||
|
run_refcase,
|
||||||
|
comp,
|
||||||
|
run_refdate,
|
||||||
|
run_reftod,
|
||||||
|
)
|
||||||
|
if os.path.exists(os.path.join(rundir, clm_startfile)):
|
||||||
|
logger.warning(
|
||||||
|
"WARNING: the start file being used for a multi-instance case is a single instance: "
|
||||||
|
+ clm_startfile
|
||||||
|
)
|
||||||
|
break
|
||||||
|
|
||||||
|
if not os.path.exists(os.path.join(rundir, clm_startfile)):
|
||||||
|
logger.warning("WARNING: Could NOT find a start file to use using" + clm_startfile)
|
||||||
|
clm_icfile = "%s = '%s'" % (startfile_type, clm_startfile)
|
||||||
|
else:
|
||||||
|
clm_icfile = ""
|
||||||
|
|
||||||
|
infile_lines = []
|
||||||
|
infile_lines.append(clm_icfile)
|
||||||
|
|
||||||
|
user_nl_file = os.path.join(caseroot, "user_nl_clm" + inst_string)
|
||||||
|
namelist_infile = os.path.join(ctsmconf, "namelist")
|
||||||
|
|
||||||
|
create_namelist_infile(case, user_nl_file, namelist_infile, "\n".join(infile_lines))
|
||||||
|
|
||||||
|
cmd = os.path.join(lnd_root, "bld", "build-namelist")
|
||||||
|
|
||||||
|
command = (
|
||||||
|
'%s -cimeroot %s -infile %s -csmdata %s -inputdata %s %s -namelist "&clm_inparm start_ymd=%s %s/ " '
|
||||||
|
"%s %s -res %s %s -clm_start_type %s -envxml_dir %s "
|
||||||
|
"-configuration %s -structure %s "
|
||||||
|
"%s -glc_nec %s %s -co2_ppmv %s -co2_type %s -config %s -driver %s "
|
||||||
|
"%s %s %s %s"
|
||||||
|
% (
|
||||||
|
cmd,
|
||||||
|
_CIMEROOT,
|
||||||
|
infile,
|
||||||
|
din_loc_root,
|
||||||
|
inputdata_file,
|
||||||
|
ignore,
|
||||||
|
start_ymd,
|
||||||
|
clm_namelist_opts,
|
||||||
|
nomeg,
|
||||||
|
usecase,
|
||||||
|
lnd_grid,
|
||||||
|
clmusr,
|
||||||
|
start_type,
|
||||||
|
caseroot,
|
||||||
|
configuration,
|
||||||
|
structure,
|
||||||
|
lndfrac_setting,
|
||||||
|
glc_nec,
|
||||||
|
glc_use_antarctica_flag,
|
||||||
|
ccsm_co2_ppmv,
|
||||||
|
clm_co2_type,
|
||||||
|
config_cache_file,
|
||||||
|
driver,
|
||||||
|
clm_bldnml_opts,
|
||||||
|
spinup,
|
||||||
|
tuning,
|
||||||
|
gridmask,
|
||||||
|
)
|
||||||
|
)
|
||||||
|
|
||||||
|
rc, out, err = run_cmd(command, from_dir=ctsmconf)
|
||||||
|
expect(rc == 0, "Command %s failed rc=%d\nout=%s\nerr=%s" % (cmd, rc, out, err))
|
||||||
|
if out is not None:
|
||||||
|
logger.debug(" %s" % out)
|
||||||
|
if err is not None:
|
||||||
|
logger.debug(" %s" % err)
|
||||||
|
|
||||||
|
# -----------------------------------------------------
|
||||||
|
# copy resolved namelist to rundir
|
||||||
|
# -----------------------------------------------------
|
||||||
|
|
||||||
|
if os.path.isdir(rundir):
|
||||||
|
file1 = os.path.join(ctsmconf, "lnd_in")
|
||||||
|
file2 = os.path.join(rundir, "lnd_in")
|
||||||
|
if ninst > 1:
|
||||||
|
file2 += inst_string
|
||||||
|
logger.debug("CTSM namelist copy: file1 %s file2 %s " % (file1, file2))
|
||||||
|
shutil.copy(file1, file2)
|
||||||
|
|
||||||
|
|
||||||
|
###############################################################################
|
||||||
|
def _main_func():
|
||||||
|
|
||||||
|
caseroot = parse_input(sys.argv)
|
||||||
|
with Case(caseroot) as case:
|
||||||
|
compname = case.get_value("COMP_LND")
|
||||||
|
logger.warning(
|
||||||
|
"WARNING: buildnml is being called a s program rather than a subroutine "
|
||||||
|
+ "as it is expected to be in the CESM context"
|
||||||
|
)
|
||||||
|
buildnml(case, caseroot, compname)
|
||||||
|
|
||||||
|
|
||||||
|
if __name__ == "__main__":
|
||||||
|
_main_func()
|
||||||
49
cime_config/config_archive.xml
Normal file
49
cime_config/config_archive.xml
Normal file
@ -0,0 +1,49 @@
|
|||||||
|
<components version="2.0">
|
||||||
|
<comp_archive_spec compname="clm" compclass="lnd">
|
||||||
|
<rest_file_extension>r</rest_file_extension>
|
||||||
|
<rest_file_extension>rh\d?</rest_file_extension>
|
||||||
|
<hist_file_extension>h\d*.*\.nc$</hist_file_extension>
|
||||||
|
<hist_file_extension>lilac_hi.*\.nc$</hist_file_extension>
|
||||||
|
<hist_file_extension>lilac_atm_driver_h\d*.*\.nc$</hist_file_extension>
|
||||||
|
<hist_file_extension>e</hist_file_extension>
|
||||||
|
<rest_history_varname>locfnh</rest_history_varname>
|
||||||
|
<rpointer>
|
||||||
|
<rpointer_file>rpointer.lnd$NINST_STRING</rpointer_file>
|
||||||
|
<rpointer_content>./$CASE.clm2$NINST_STRING.r.$DATENAME.nc</rpointer_content>
|
||||||
|
</rpointer>
|
||||||
|
<test_file_names>
|
||||||
|
<tfile disposition="copy">rpointer.lnd</tfile>
|
||||||
|
<tfile disposition="copy">rpointer.lnd_9999</tfile>
|
||||||
|
<tfile disposition="copy">casename.clm2.r.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="copy">casename.clm2.rh4.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="move">casename.clm2.h0.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="move">casename.clm2.lilac_hi.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="move">casename.clm2.lilac_atm_driver_h0.0001-01.nc</tfile>
|
||||||
|
<tfile disposition="ignore">casename.clm2.h0.1976-01-01-00000.nc.base</tfile>
|
||||||
|
<tfile disposition="move">casename.clm2_0002.e.postassim.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="move">casename.clm2_0002.e.preassim.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="ignore">anothercasename.clm2.i.1976-01-01-00000.nc</tfile>
|
||||||
|
</test_file_names>
|
||||||
|
</comp_archive_spec>
|
||||||
|
<comp_archive_spec compname="ctsm" compclass="lnd">
|
||||||
|
<rest_file_extension>r</rest_file_extension>
|
||||||
|
<rest_file_extension>rh\d?</rest_file_extension>
|
||||||
|
<hist_file_extension>h\d*.*\.nc$</hist_file_extension>
|
||||||
|
<hist_file_extension>e</hist_file_extension>
|
||||||
|
<rest_history_varname>locfnh</rest_history_varname>
|
||||||
|
<rpointer>
|
||||||
|
<rpointer_file>rpointer.lnd$NINST_STRING</rpointer_file>
|
||||||
|
<rpointer_content>./$CASE.ctsm$NINST_STRING.r.$DATENAME.nc</rpointer_content>
|
||||||
|
</rpointer>
|
||||||
|
<test_file_names>
|
||||||
|
<tfile disposition="copy">rpointer.lnd</tfile>
|
||||||
|
<tfile disposition="copy">rpointer.lnd_9999</tfile>
|
||||||
|
<tfile disposition="copy">casename.ctsm.r.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="copy">casename.ctsm.rh4.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="move">casename.ctsm.h0.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="ignore">casename.ctsm.h0.1976-01-01-00000.nc.base</tfile>
|
||||||
|
<tfile disposition="move">casename.ctsm_0002.e.postassim.1976-01-01-00000.nc</tfile>
|
||||||
|
<tfile disposition="move">casename.ctsm_0002.e.preassim.1976-01-01-00000.nc</tfile>
|
||||||
|
</test_file_names>
|
||||||
|
</comp_archive_spec>
|
||||||
|
</components>
|
||||||
410
cime_config/config_component.xml
Normal file
410
cime_config/config_component.xml
Normal file
@ -0,0 +1,410 @@
|
|||||||
|
|
||||||
|
<?xml-stylesheet type="text/xsl" href="definitions_variables.xsl" ?>
|
||||||
|
|
||||||
|
<entry_id version="3.0">
|
||||||
|
|
||||||
|
<!-- modifier_mode allowed values are
|
||||||
|
'*' 0 or more modifiers (default)
|
||||||
|
'1' exactly 1 modifier
|
||||||
|
'?' 0 or 1 modifiers
|
||||||
|
'+' 1 or more modifiers
|
||||||
|
This file may have lnd desc entries.
|
||||||
|
-->
|
||||||
|
|
||||||
|
<!-- Descriptions of all the different valid configurations for different model versions -->
|
||||||
|
<description modifier_mode="1">
|
||||||
|
<desc lnd="CLM45[%SP][%SP-VIC][%BGC][%BGC-CROP][%FATES][%BGCDV][%BGCDV-CROP]" >clm4.5:</desc>
|
||||||
|
<desc lnd="CLM50[%SP][%SP-VIC][%SP-NOANTHRO][%BGC-NOANTHRO][%BGC][%BGC-CROP][%FATES][%BGCDV][%BGCDV-CROP][%BGC-CROP-CMIP6DECK][%BGC-CROP-CMIP6WACCMDECK][%NWP-SP][%NWP-BGC-CROP]">clm5.0:</desc>
|
||||||
|
<desc lnd="CLM51[%SP][%SP-NOANTHRO][%BGC-NOANTHRO][%BGC][%BGC-CROP][%FATES][%FATES-SP][%NWP-SP][%NWP-BGC-CROP]">clm5.1:</desc>
|
||||||
|
<desc lnd="CLM60[%SP][%SP-NOANTHRO][%BGC-NOANTHRO][%BGC][%BGC-CROP][%FATES][%FATES-SP][%NWP-SP][%NWP-BGC-CROP]">clm6.0:</desc>
|
||||||
|
<desc option="SP" >Satellite phenology:</desc>
|
||||||
|
|
||||||
|
<desc option="SP-VIC" >Satellite phenology with VIC hydrology:</desc>
|
||||||
|
<desc option="SP-NOANTHRO" >Satellite phenology without anthropomorphic influences</desc>
|
||||||
|
<desc option="BGC" >BGC (vert. resol. CN and methane):</desc>
|
||||||
|
<desc option="BGC-CROP" >BGC (vert. resol. CN and methane) with prognostic crop:</desc>
|
||||||
|
<desc option="BGC-NOANTHRO" >BGC (vert. resol. CN and methane) without anthropomorphic influences:</desc>
|
||||||
|
<desc option="FATES" >FATES (Functionally Assembled Terrestrial Ecosystem Simulator) Ecosystem Demography model: </desc>
|
||||||
|
<desc option="FATES-SP" >Satellite phenology with FATES (Functionally Assembled Terrestrial Ecosystem Simulator) Ecosystem Demography model: </desc>
|
||||||
|
<desc option="BGCDV" >BGC (vert. resol. CN and methane) with dynamic vegetation:</desc>
|
||||||
|
<desc option="BGCDV-CROP" >BGC (vert. resol. CN and methane) with dynamic vegetation and prognostic crop:</desc>
|
||||||
|
<desc option="BGC-CROP-CMIP6DECK">BGC (vert. resol. CN and methane) with prognostic crop, with modifications appropriate for CMIP6 DECK experiments:</desc>
|
||||||
|
<desc option="BGC-CROP-CMIP6WACCMDECK">BGC (vert. resol. CN and methane) with prognostic crop, with modifications appropriate for CMIP6 WACCM DECK experiments:</desc>
|
||||||
|
|
||||||
|
<desc option="NWP-SP" >NWP configuration with satellite phenology:</desc>
|
||||||
|
<desc option="NWP-BGC-CROP" >NWP configuration with BGC and CROP:</desc>
|
||||||
|
</description>
|
||||||
|
<entry id="COMP_LND">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>clm,ctsm</valid_values>
|
||||||
|
<default_value>UNSET</default_value>
|
||||||
|
<values>
|
||||||
|
<value compset="CLM" >clm</value>
|
||||||
|
<value compset="CTSM">ctsm</value>
|
||||||
|
</values>
|
||||||
|
<group>case_comp</group>
|
||||||
|
<file>env_case.xml</file>
|
||||||
|
<desc>Name of land component</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="LILAC_MODE">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>on,off</valid_values>
|
||||||
|
<default_value>off</default_value>
|
||||||
|
<group>build_component_ctsm</group>
|
||||||
|
<file>env_build.xml</file>
|
||||||
|
<desc>Flag to enable building the LILAC cap and coupling code</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="LND_TUNING_MODE">
|
||||||
|
<type>char</type>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Tuning parameters and initial conditions should be optimized for what CLM model version and what meteorlogical forcing combination?
|
||||||
|
Options for all combinations of CLM physics and atm forcing are given. The buildnml and namelist_defaults will narrow it down to the ones
|
||||||
|
that have been tuned. The buildnml will also warn you if a tuning combination is based on another set.
|
||||||
|
Atm forcing options:
|
||||||
|
CRUv7
|
||||||
|
GSWP3
|
||||||
|
CAM4.0
|
||||||
|
CAM5.0
|
||||||
|
CAM6.0
|
||||||
|
CAM7.0
|
||||||
|
QIAN (not tuned)
|
||||||
|
1PT (not tuned)
|
||||||
|
NLDAS2 (not tuned)
|
||||||
|
ERA5 (not tuned)
|
||||||
|
Other atm forcing options are invalid to run CLM and will result in an error.
|
||||||
|
</desc>
|
||||||
|
<default_value>UNSET</default_value>
|
||||||
|
<!-- 10 forcing options for each CLM physics option: CRUv7, GSWP3, cam7.0, cam6.0, cam5.0, cam4.0, QIAN, 1PT, NLDAS2, ERA5 -->
|
||||||
|
<valid_values>clm5_0_cam6.0,clm5_0_cam7.0,clm5.0_cam5.0,clm5.0_cam4.0,clm5_0_GSWP3v1,clm5_0_CRUv7,clm5_0_QIAN,clm5_0_1PT,clm5_0_NLDAS2,clm5_0_ERA5,clm4_5_CRUv7,clm4_5_GSWP3v1,clm4_5_QIAN,clm4_5_cam6.0,clm4_5_cam7.0,clm4_5_cam5.0,clm4_5_cam4.0,clm4_5_1PT,clm4_5_NLDAS2,clm4_5_ERA5,clm5_1_CRUv7,clm5_1_GSWP3v1,clm5_1_cam6.0,clm5_1_QIAN,clm5_1_1PT,clm5_1_NLDAS2,clm5_1_ERA5,clm6_0_CRUv7,clm6_0_GSWP3v1,clm6_0_cam6.0,clm6_0_cam7.0,clm6_0_cam5.0,clm6_0_cam4.0,clm6_0_QIAN,clm6_0_1PT,clm6_0_NLDAS2,clm6_0_ERA5</valid_values>
|
||||||
|
<values match="last">
|
||||||
|
<!-- Options for atm forcing are: CRU, CRUv7, GSWP3, cam6.0 (also used for DATM%CPLHIST), cam5.0, cam4.0, QIAN, WISOQIA, 1PT, NLDAS2, and ERA5) -->
|
||||||
|
<!-- All the clm4_5 physics options -->
|
||||||
|
<value compset="SATM_CLM45" >clm4_5_CRUv7</value>
|
||||||
|
<value compset="DATM%CRUv7_CLM45" >clm4_5_CRUv7</value>
|
||||||
|
<value compset="DATM%CRU_CLM45" >clm4_5_CRUv7</value>
|
||||||
|
<value compset="DATM%GSWP3v1_CLM45">clm4_5_GSWP3v1</value>
|
||||||
|
<value compset="CAM[^_]+_CLM45" >clm4_5_cam6.0</value>
|
||||||
|
<value compset="CAM40.*_CLM45" >clm4_5_cam4.0</value>
|
||||||
|
<value compset="CAM50.*_CLM45" >clm4_5_cam5.0</value>
|
||||||
|
<value compset="CAM7[^_]+_CLM45" >clm4_5_cam7.0</value>
|
||||||
|
<value compset="DATM%CPLHIST_CLM45">clm4_5_cam6.0</value>
|
||||||
|
<value compset="DATM%QIA_CLM45" >clm4_5_QIAN</value>
|
||||||
|
<value compset="DATM%WISOQIA_CLM45">clm4_5_QIAN</value>
|
||||||
|
<value compset="DATM%1PT_CLM45" >clm4_5_1PT</value>
|
||||||
|
<value compset="DATM%NLDAS2_CLM45" >clm4_5_NLDAS2</value>
|
||||||
|
<value compset="DATM%ERA5_CLM45" >clm4_5_ERA5</value>
|
||||||
|
<!-- All the clm5_0 physics options -->
|
||||||
|
<value compset="DATM%CRUv7_CLM50" >clm5_0_CRUv7</value>
|
||||||
|
<value compset="DATM%CRU_CLM50" >clm5_0_CRUv7</value>
|
||||||
|
<value compset="SATM_CLM50" >clm5_0_GSWP3v1</value>
|
||||||
|
<value compset="DATM%GSWP3v1_CLM50">clm5_0_GSWP3v1</value>
|
||||||
|
<value compset="CAM[^_]+_CLM50" >clm5_0_cam6.0</value>
|
||||||
|
<value compset="CAM40.*_CLM50" >clm5_0_cam4.0</value>
|
||||||
|
<value compset="CAM50.*_CLM50" >clm5_0_cam5.0</value>
|
||||||
|
<value compset="CAM7[^_]+_CLM50" >clm5_0_cam7.0</value>
|
||||||
|
<value compset="DATM%CPLHIST_CLM50">clm5_0_cam6.0</value>
|
||||||
|
<value compset="DATM%QIA_CLM50" >clm5_0_QIAN</value>
|
||||||
|
<value compset="DATM%WISOQIA_CLM50">clm5_0_QIAN</value>
|
||||||
|
<value compset="DATM%1PT_CLM50" >clm5_0_1PT</value>
|
||||||
|
<value compset="DATM%NLDAS2_CLM50" >clm5_0_NLDAS2</value>
|
||||||
|
<value compset="DATM%ERA5_CLM50" >clm5_0_ERA5</value>
|
||||||
|
<!-- All the clm5_1 physics options -->
|
||||||
|
<value compset="SATM_CLM51" >clm5_1_GSWP3v1</value>
|
||||||
|
<value compset="DATM%GSWP3v1_CLM51">clm5_1_GSWP3v1</value>
|
||||||
|
<value compset="CAM[^_]+_CLM51" >clm5_1_cam6.0</value>
|
||||||
|
<value compset="CAM40.*_CLM51" >clm5_1_cam4.0</value>
|
||||||
|
<value compset="CAM50.*_CLM51" >clm5_1_cam5.0</value>
|
||||||
|
<value compset="DATM%CPLHIST_CLM51">clm5_1_cam6.0</value>
|
||||||
|
<!-- All the clm6_0 physics options -->
|
||||||
|
<value compset="DATM%CRUv7_CLM60" >clm6_0_CRUv7</value>
|
||||||
|
<value compset="DATM%CRU_CLM60" >clm6_0_CRUv7</value>
|
||||||
|
<value compset="SATM_CLM60" >clm6_0_GSWP3v1</value>
|
||||||
|
<value compset="DATM%GSWP3v1_CLM60">clm6_0_GSWP3v1</value>
|
||||||
|
<value compset="CAM[^_]+_CLM60" >clm6_0_cam6.0</value>
|
||||||
|
<value compset="CAM40.*_CLM60" >clm6_0_cam4.0</value>
|
||||||
|
<value compset="CAM50.*_CLM60" >clm6_0_cam5.0</value>
|
||||||
|
<value compset="CAM7[^_]+_CLM60" >clm6_0_cam7.0</value>
|
||||||
|
<value compset="DATM%CPLHIST_CLM60">clm6_0_cam6.0</value>
|
||||||
|
<value compset="DATM%QIA_CLM60" >clm6_0_QIAN</value>
|
||||||
|
<value compset="DATM%WISOQIA_CLM60">clm6_0_QIAN</value>
|
||||||
|
<value compset="DATM%1PT_CLM60" >clm6_0_1PT</value>
|
||||||
|
<value compset="DATM%NLDAS2_CLM60" >clm6_0_NLDAS2</value>
|
||||||
|
<value compset="DATM%ERA5_CLM60" >clm6_0_ERA5</value>
|
||||||
|
<!-- Invalid ocean DATM forcing options -->
|
||||||
|
<value compset="DATM%NYF" >INVALID_DATM_FORCING_FOR_RUNNING_CTSM</value>
|
||||||
|
<value compset="DATM%MOSARTTEST" >INVALID_DATM_FORCING_FOR_RUNNING_CTSM</value>
|
||||||
|
<value compset="DATM%IAF" >INVALID_DATM_FORCING_FOR_RUNNING_CTSM</value>
|
||||||
|
<value compset="DATM%JRA" >INVALID_DATM_FORCING_FOR_RUNNING_CTSM</value>
|
||||||
|
</values>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_PHYSICS_VERSION" >
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>clm4_5,clm5_0,clm5_1,clm6_0</valid_values>
|
||||||
|
<!-- By setting the default_value to UNSET (or some other non-empty
|
||||||
|
string that doesn't appear in the list of valid_values), the
|
||||||
|
scripts will ensure that one of the below values is picked up
|
||||||
|
by the compset match. -->
|
||||||
|
<default_value>UNSET</default_value>
|
||||||
|
<values>
|
||||||
|
<value compset="_CLM45" >clm4_5</value>
|
||||||
|
<value compset="_CLM50" >clm5_0</value>
|
||||||
|
<value compset="_CLM51" >clm5_1</value>
|
||||||
|
<value compset="_CLM60" >clm6_0</value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Overall physics version to use.
|
||||||
|
This sets the default values for many different namelist options.
|
||||||
|
This is typically set by the compset.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_CONFIGURATION">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>clm,nwp</valid_values>
|
||||||
|
<default_value>clm</default_value>
|
||||||
|
<values>
|
||||||
|
<value compset="_CLM[^_]*%NWP">nwp</value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Sets CLM default namelist options related to model configuration.
|
||||||
|
clm: Configuration used for climate applications (CLM)
|
||||||
|
nwp: Configuration used for numerical weather prediction applications
|
||||||
|
</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_STRUCTURE">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>standard,fast</valid_values>
|
||||||
|
<default_value>standard</default_value>
|
||||||
|
<values>
|
||||||
|
<value compset="_CLM[^_]*%NWP">fast</value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Sets CLM default namelist options related to model structure.
|
||||||
|
standard: Standard model structure, allowing for more subgrid heterogeneity,
|
||||||
|
deeper soil, etc., at the cost of slower speeds.
|
||||||
|
fast: Simplified model structure, achieving faster speeds at the cost of less
|
||||||
|
subgrid heterogeneity, shallower soil, etc.
|
||||||
|
</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_NML_USE_CASE">
|
||||||
|
<type>char</type>
|
||||||
|
<default_value>UNSET</default_value>
|
||||||
|
<values>
|
||||||
|
<!-- Use SSP5-8.5 for PI to PDAY so will have data up to the current year available (for WACCM compsets that use PDAY) -->
|
||||||
|
<value compset="^2010_" >2010_control</value>
|
||||||
|
<value compset="^2000_" >2000_control</value>
|
||||||
|
<value compset="^1850_" >1850_control</value>
|
||||||
|
<value compset="^1850_.*_CLM60%[^_]*NOANTHRO" >1850_noanthro_control</value>
|
||||||
|
<value compset="^1850_.*_CLM50%[^_]*NOANTHRO" >1850_noanthro_control</value>
|
||||||
|
<value compset="^HIST_" >20thC_transient</value>
|
||||||
|
<value compset="^SSP585_" >1850-2100_SSP5-8.5_transient</value>
|
||||||
|
<value compset="^SSP126_" >1850-2100_SSP1-2.6_transient</value>
|
||||||
|
<value compset="^SSP370_" >1850-2100_SSP3-7.0_transient</value>
|
||||||
|
<value compset="^SSP534_" >1850-2100_SSP5-3.4_transient</value>
|
||||||
|
<value compset="^SSP245_" >1850-2100_SSP2-4.5_transient</value>
|
||||||
|
<value compset="^SSP119_" >1850-2100_SSP1-1.9_transient</value>
|
||||||
|
<value compset="^SSP434_" >1850-2100_SSP4-3.4_transient</value>
|
||||||
|
<value compset="^SSP460_" >1850-2100_SSP4-6.0_transient</value>
|
||||||
|
<value compset="^SSP585_" >1850-2100_SSP5-8.5_transient</value>
|
||||||
|
<value compset="^AMIP_" >20thC_transient</value>
|
||||||
|
<value compset="^PIPD_" >1850-2100_SSP5-8.5_transient</value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>CLM namelist use_case.
|
||||||
|
Determines the use-case that will be sent to the CLM build-namelist utility.
|
||||||
|
This is normally set by the component set. This is an advanced flag and should only be
|
||||||
|
used by expert users.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<!-- CLM_BLDNML_OPTS is not additive, we must list all possible combinations -->
|
||||||
|
<!-- ERROR: the node below is never matched, see bug 2025 -->
|
||||||
|
<entry id="CLM_BLDNML_OPTS">
|
||||||
|
<type>char</type>
|
||||||
|
<default_value></default_value>
|
||||||
|
<values>
|
||||||
|
<!--- All versions -->
|
||||||
|
<value compset="_CLM[^_]*%SP" >-bgc sp</value>
|
||||||
|
<value compset="_CLM[^_]*BGC" >-bgc bgc</value>
|
||||||
|
<value compset="_CLM[^_]*BGC-CROP" >-bgc bgc -crop</value>
|
||||||
|
<value compset="_CLM[^_]*FATES" >-bgc fates -no-megan</value>
|
||||||
|
<value compset="_CLM[^_]*FATES-SP" >-bgc fates -no-megan</value>
|
||||||
|
|
||||||
|
<!-- Options specific for CLM4.5 -->
|
||||||
|
<value compset="_CLM45%[^_]*BGCDV" >-bgc bgc -dynamic_vegetation</value>
|
||||||
|
<value compset="_CLM45%[^_]*BGCDV-CROP" >-bgc bgc -dynamic_vegetation -crop</value>
|
||||||
|
<value compset="_CLM45%[^_]*SP-VIC" >-bgc sp -vichydro </value>
|
||||||
|
|
||||||
|
<!-- Options specific for CLM5.0 -->
|
||||||
|
<value compset="_CLM50%[^_]*BGCDV" >-bgc bgc -dynamic_vegetation</value>
|
||||||
|
<value compset="_CLM50%[^_]*BGCDV-CROP" >-bgc bgc -dynamic_vegetation -crop</value>
|
||||||
|
<value compset="_CLM50%[^_]*SP-VIC" >-bgc sp -vichydro </value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>CLM build-namelist options</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_CO2_TYPE">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>constant,diagnostic,prognostic</valid_values>
|
||||||
|
<default_value>constant</default_value>
|
||||||
|
<values>
|
||||||
|
<value compset="_CAM" >diagnostic</value>
|
||||||
|
<value compset="_BGC%BDRD" >diagnostic</value>
|
||||||
|
<value compset="_BGC%BPRP" >prognostic</value>
|
||||||
|
<value compset="HIST.*_DATM" >diagnostic</value>
|
||||||
|
<value compset="SSP.*_DATM" >diagnostic</value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Determines how CLM will determine where CO2 is set.
|
||||||
|
If value is constant, it will be set to CCSM_CO2_PPMV,
|
||||||
|
if value is either diagnostic or prognostic, the atmosphere model
|
||||||
|
MUST send it to CLM. CLM_CO2_TYPE is normally set by the specific
|
||||||
|
compset, since it HAS to be coordinated with settings for the
|
||||||
|
atmospheric model. Do not modify this variable. If you want to modify for
|
||||||
|
your experiment, use your own user-defined component set
|
||||||
|
This is an advanced flag and should only be used by expert users.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_NAMELIST_OPTS">
|
||||||
|
<type>char</type>
|
||||||
|
<default_value></default_value>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>CLM-specific namelist settings for -namelist option in the CLM
|
||||||
|
build-namelist. CLM_NAMELIST_OPTS is normally set as a compset variable
|
||||||
|
and in general should not be modified for supported compsets.
|
||||||
|
It is recommended that if you want to modify this value for your experiment,
|
||||||
|
you should use your own user-defined component sets via using create_newcase
|
||||||
|
with a compset_file argument.
|
||||||
|
This is an advanced flag and should only be used by expert users.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_ACCELERATED_SPINUP">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>on,off</valid_values>
|
||||||
|
<default_value>off</default_value>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Turn on any settings for accellerating the model spinup.
|
||||||
|
</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_USRDAT_NAME">
|
||||||
|
<type>char</type>
|
||||||
|
<default_value>UNSET</default_value>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Resolution name for user-created resolutions. This is especially used
|
||||||
|
for single point and regional resolutions created via subset_data from
|
||||||
|
the global datasets. This should be set when you use CLM_USRDAT as the grid
|
||||||
|
to create_newcase. The default value is UNSET.
|
||||||
|
For NEON cases, this can be set to either NEON or NEON.PRISM, the latter of which would
|
||||||
|
use PRISM precipitation instead of the default NEON precipitation. NEON cases then also
|
||||||
|
use the variable NEONSITE to specify the exact site.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_USRDAT_DIR">
|
||||||
|
<type>char</type>
|
||||||
|
<default_value>UNSET</default_value>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Directory name for user-created surface, landuse, and datm datasets.
|
||||||
|
This is used as an argument in user_mods namelists (e.g. user_nl_clm,
|
||||||
|
user_nl_datm_streams) generated with the subset_data script. Users
|
||||||
|
should modify this variable (in shell_commands or elsewhere) to set the
|
||||||
|
location of user-created data. The default value is UNSET.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_FORCE_COLDSTART">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>on,off</valid_values>
|
||||||
|
<default_value>off</default_value>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Flag to the CLM build-namelist command to force CLM to do a
|
||||||
|
cold start (finidat will be set to blanks).
|
||||||
|
A value of on forces the model to spin up from a cold-start
|
||||||
|
(arbitrary initial conditions). Setting this value in the xml file will take
|
||||||
|
precedence over any settings for finidat in the $CASEROOT/user_nl_ctsm file.</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="CLM_USER_MODS">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values></valid_values>
|
||||||
|
<default_value></default_value>
|
||||||
|
<values match="last">
|
||||||
|
<value compset="_CLM60%[^_]*FATES-SP[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/fates_sp</value>
|
||||||
|
<value compset="_CLM51%[^_]*FATES-SP[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/fates_sp</value>
|
||||||
|
<value compset="_CLM50%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_deck</value>
|
||||||
|
<value grid="l%1.9x2.5" compset="_CLM50%[^_]*CMIP6DECK[%_]" >$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_nociso_deck</value>
|
||||||
|
<value compset="_CLM50%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_waccm_deck</value>
|
||||||
|
<value grid="l%1.9x2.5" compset="_CLM50%[^_]*CMIP6WACCMDECK[%_]">$COMP_ROOT_DIR_LND/cime_config/usermods_dirs/cmip6_waccm_nociso_deck</value>
|
||||||
|
</values>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_case.xml</file>
|
||||||
|
<desc>User mods to apply to specific compset matches. </desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="NEONSITE">
|
||||||
|
<type>char</type>
|
||||||
|
<!-- NOTE: Be sure to have a comma at the last site-name - otherwise there will be issues see CTSM github issue #1901 -->
|
||||||
|
<valid_values>
|
||||||
|
ABBY,BLAN,CPER,DEJU,GRSM,HEAL,KONA,LENO,NIWO,ONAQ,PUUM,SERC,SRER,TALL,TREE,WOOD,
|
||||||
|
BARR,BONA,DCFS,DELA,GUAN,JERC,KONZ,MLBS,NOGP,ORNL,RMNP,SJER,STEI,TEAK,UKFS,WREF,
|
||||||
|
BART,CLBJ,DSNY,HARV,JORN,LAJA,MOAB,OAES,OSBS,SCBI,SOAP,STER,TOOL,UNDE,YELL,
|
||||||
|
NEON_PRECIP.ABBY,NEON_PRECIP.BLAN,NEON_PRECIP.CPER,NEON_PRECIP.DEJU,NEON_PRECIP.GRSM,
|
||||||
|
NEON_PRECIP.HEAL,NEON_PRECIP.KONA,NEON_PRECIP.LENO,NEON_PRECIP.NIWO,NEON_PRECIP.ONAQ,
|
||||||
|
NEON_PRECIP.PUUM,NEON_PRECIP.SERC,NEON_PRECIP.SRER,NEON_PRECIP.TALL,NEON_PRECIP.TREE,
|
||||||
|
NEON_PRECIP.WOOD,NEON_PRECIP.BARR,NEON_PRECIP.BONA,NEON_PRECIP.DCFS,NEON_PRECIP.DELA,
|
||||||
|
NEON_PRECIP.GUAN,NEON_PRECIP.JERC,NEON_PRECIP.KONZ,NEON_PRECIP.MLBS,NEON_PRECIP.NOGP,
|
||||||
|
NEON_PRECIP.ORNL,NEON_PRECIP.RMNP,NEON_PRECIP.SJER,NEON_PRECIP.STEI,NEON_PRECIP.TEAK,
|
||||||
|
NEON_PRECIP.UKFS,NEON_PRECIP.WREF,NEON_PRECIP.BART,NEON_PRECIP.CLBJ,NEON_PRECIP.DSNY,
|
||||||
|
NEON_PRECIP.HARV,NEON_PRECIP.JORN,NEON_PRECIP.LAJA,NEON_PRECIP.MOAB,NEON_PRECIP.OAES,
|
||||||
|
NEON_PRECIP.OSBS,NEON_PRECIP.SCBI,NEON_PRECIP.SOAP,NEON_PRECIP.STER,NEON_PRECIP.TOOL,
|
||||||
|
NEON_PRECIP.UNDE,NEON_PRECIP.YELL,
|
||||||
|
PRISM_PRECIP.ABBY,PRISM_PRECIP.BLAN,PRISM_PRECIP.CPER,PRISM_PRECIP.GRSM,
|
||||||
|
PRISM_PRECIP.KONA,PRISM_PRECIP.LENO,PRISM_PRECIP.NIWO,PRISM_PRECIP.ONAQ,
|
||||||
|
PRISM_PRECIP.SERC,PRISM_PRECIP.SRER,PRISM_PRECIP.TALL,PRISM_PRECIP.TREE,
|
||||||
|
PRISM_PRECIP.WOOD,PRISM_PRECIP.DCFS,PRISM_PRECIP.DELA,PRISM_PRECIP.JERC,
|
||||||
|
PRISM_PRECIP.KONZ,PRISM_PRECIP.MLBS,PRISM_PRECIP.NOGP,PRISM_PRECIP.ORNL,
|
||||||
|
PRISM_PRECIP.RMNP,PRISM_PRECIP.SJER,PRISM_PRECIP.STEI,PRISM_PRECIP.TEAK,
|
||||||
|
PRISM_PRECIP.UKFS,PRISM_PRECIP.WREF,PRISM_PRECIP.BART,PRISM_PRECIP.CLBJ,
|
||||||
|
PRISM_PRECIP.DSNY,PRISM_PRECIP.HARV,PRISM_PRECIP.JORN,PRISM_PRECIP.MOAB,
|
||||||
|
PRISM_PRECIP.OAES,PRISM_PRECIP.OSBS,PRISM_PRECIP.SCBI,PRISM_PRECIP.SOAP,
|
||||||
|
PRISM_PRECIP.STER,PRISM_PRECIP.UNDE,PRISM_PRECIP.YELL,
|
||||||
|
</valid_values>
|
||||||
|
<default_value/>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Name of site for NEON tower data</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="NEONVERSION">
|
||||||
|
<type>char</type>
|
||||||
|
<valid_values>v1,v2,v3,latest</valid_values>
|
||||||
|
<default_value>latest</default_value>
|
||||||
|
<group>run_component_ctsm</group>
|
||||||
|
<file>env_run.xml</file>
|
||||||
|
<desc>Version id of Neon data</desc>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<help>
|
||||||
|
=========================================
|
||||||
|
CLM naming conventions
|
||||||
|
=========================================
|
||||||
|
note: [^_]* means match zero or more of any character BUT an underbar.
|
||||||
|
(in other words make sure there is NOT a underbar before the string afterwards)
|
||||||
|
</help>
|
||||||
|
|
||||||
|
</entry_id>
|
||||||
702
cime_config/config_compsets.xml
Normal file
702
cime_config/config_compsets.xml
Normal file
@ -0,0 +1,702 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<compsets version="2.0">
|
||||||
|
|
||||||
|
<help>
|
||||||
|
=========================================
|
||||||
|
compset naming convention
|
||||||
|
=========================================
|
||||||
|
The compset longname below has the specified order
|
||||||
|
atm, lnd, ice, ocn, river, glc wave cesm-options
|
||||||
|
|
||||||
|
The notation for the compset longname is
|
||||||
|
TIME_ATM[%phys]_LND[%phys]_ICE[%phys]_OCN[%phys]_ROF[%phys]_GLC[%phys]_WAV[%phys][_BGC%phys]
|
||||||
|
Where for the CAM specific compsets below the following is supported
|
||||||
|
TIME = Time period (e.g. 2000, HIST, SSP585...)
|
||||||
|
ATM = [CAM40, CAM50, CAM60]
|
||||||
|
LND = [CLM45, CLM50, CLM51, CLM60, SLND]
|
||||||
|
ICE = [CICE, DICE, SICE]
|
||||||
|
OCN = [DOCN, ,AQUAP, SOCN]
|
||||||
|
ROF = [RTM, SROF]
|
||||||
|
GLC = [CISM2, SGLC]
|
||||||
|
WAV = [SWAV]
|
||||||
|
BGC = optional BGC scenario
|
||||||
|
|
||||||
|
The OPTIONAL %phys attributes specify submodes of the given system
|
||||||
|
For example DOCN%DOM is the data ocean model for DOCN
|
||||||
|
ALL the possible %phys choices for each component are listed
|
||||||
|
with the -list command for create_newcase
|
||||||
|
ALL data models must have a %phys option that corresponds to the data model mode
|
||||||
|
|
||||||
|
Each compset node is associated with the following elements
|
||||||
|
- lname
|
||||||
|
- alias
|
||||||
|
- science_support (if this compset is supported scientifically with control simulations)
|
||||||
|
</help>
|
||||||
|
|
||||||
|
<!-- I single point forcing -->
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1PtClm60Bgc</alias>
|
||||||
|
<lname>2000_DATM%1PT_CLM60%BGC_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1PtClm60Fates</alias>
|
||||||
|
<lname>2000_DATM%1PT_CLM60%FATES_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHist1PtClm60Bgc</alias>
|
||||||
|
<lname>HIST_DATM%1PT_CLM60%BGC_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHist1PtClm60Fates</alias>
|
||||||
|
<lname>HIST_DATM%1PT_CLM60%FATES_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1PtClm60SpRs</alias>
|
||||||
|
<lname>2000_DATM%1PT_CLM60%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1PtClm50SpRs</alias>
|
||||||
|
<lname>2000_DATM%1PT_CLM50%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1PtClm45SpRs</alias>
|
||||||
|
<lname>2000_DATM%1PT_CLM45%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- I CLM50 Compsets -->
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50Sp</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50SpRs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60SpRs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60Sp</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60SpRs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50SpRtm</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50SpMizGs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MIZUROUTE_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2010Clm50Sp</alias>
|
||||||
|
<lname>2010_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcCru</alias>
|
||||||
|
<lname>2000_DATM%CRUv7_CLM50%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcCropRtm</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcCrop</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60BgcCrop</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60Bgc</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50Sp</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50SpCru</alias>
|
||||||
|
<lname>1850_DATM%CRUv7_CLM50%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60SpCru</alias>
|
||||||
|
<lname>1850_DATM%CRUv7_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcCrop</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60BgcCrop</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- currently needed for CESM remove when no longer needed -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60BgcCrop</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60Sp</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60Bgc</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- Primarily for testing the CMIP6DECK compset option -->
|
||||||
|
<!-- Use the CMIP6 version (clm5_0) -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcCropCmip6</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%BGC-CROP-CMIP6DECK_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing the CMIP6WACCMDECK compset option -->
|
||||||
|
<!-- Use the CMIP6 version (clm5_0) -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcCropCmip6waccm</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%BGC-CROP-CMIP6WACCMDECK_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- clm5_0 (CMIP6) version with BGC-Crop and CRU forcing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcCropCru</alias>
|
||||||
|
<lname>1850_DATM%CRUv7_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- latest CLM version with BGC-Crop and CRU forcing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60BgcCropCru</alias>
|
||||||
|
<lname>1850_DATM%CRUv7_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing - when we want builds and runs to be as
|
||||||
|
fast as possible, but still with full-featured CTSM: uses Qian
|
||||||
|
atm forcing to speed up datm, SROF to speed up build and run -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60BgcCropQianRs</alias>
|
||||||
|
<lname>2000_DATM%QIA_CLM60%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcCropQianRs</alias>
|
||||||
|
<lname>2000_DATM%QIA_CLM50%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm45BgcCropQianRs</alias>
|
||||||
|
<lname>2000_DATM%QIA_CLM45%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50FatesQian</alias>
|
||||||
|
<lname>2000_DATM%QIA_CLM50%FATES_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcCruRs</alias>
|
||||||
|
<lname>2000_DATM%CRUv7_CLM50%BGC_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50SpRtmFl</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_RTM%FLOOD_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!---I FATES compsets -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60Fates</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%FATES_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50Fates</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%FATES_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50FatesCruRsGs</alias>
|
||||||
|
<lname>2000_DATM%CRUv7_CLM50%FATES_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60FatesSpCruRsGs</alias>
|
||||||
|
<lname>2000_DATM%CRUv7_CLM60%FATES-SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60FatesSpRsGs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%FATES-SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50FatesCru</alias>
|
||||||
|
<lname>2000_DATM%CRUv7_CLM50%FATES_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50FatesRs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%FATES_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm60FatesRs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM60%FATES_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50Bgc</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60BgcNoAnthro</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%BGC-NOANTHRO_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60SpNoAnthro</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%SP-NOANTHRO_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcNoAnthro</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%BGC-NOANTHRO_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50SpNoAnthro</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%SP-NOANTHRO_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50BgcCrop</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60SpNoAnthro</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%SP-NOANTHRO_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60Sp</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Needed for testing until CAM removes used of CLM51 in compsets-->
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm51Sp</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM51%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60SpRs</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60Bgc</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM60%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60BgcCrop</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50Sp</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50SpCru</alias>
|
||||||
|
<lname>HIST_DATM%CRUv7_CLM50%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60SpCru</alias>
|
||||||
|
<lname>HIST_DATM%CRUv7_CLM60%SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50Bgc</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM50%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing; uses Qian atmospheric forcing simply to
|
||||||
|
give faster datm throughput, which is particularly relevant for
|
||||||
|
single-point cases (where datm dominates the runtime) -->
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50BgcQian</alias>
|
||||||
|
<lname>HIST_DATM%QIA_CLM50%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50BgcQianRs</alias>
|
||||||
|
<lname>HIST_DATM%QIA_CLM50%BGC_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60BgcQianRs</alias>
|
||||||
|
<lname>HIST_DATM%QIA_CLM60%BGC_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
future scenario compsets
|
||||||
|
-->
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP585Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP585_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP126Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP126_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP119Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP119_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP245Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP245_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP370Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP370_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP434Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP434_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP460Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP460_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP534Clm50BgcCrop</alias>
|
||||||
|
<lname>SSP534_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Latest CLM version -->
|
||||||
|
<compset>
|
||||||
|
<alias>ISSP585Clm60BgcCrop</alias>
|
||||||
|
<lname>SSP585_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- Primarily for testing; uses Qian atmospheric forcing simply to
|
||||||
|
give faster datm throughput, which is particularly relevant for
|
||||||
|
single-point cases (where datm dominates the runtime) -->
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50BgcCropQianRs</alias>
|
||||||
|
<lname>HIST_DATM%QIA_CLM50%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm60BgcCropQianRs</alias>
|
||||||
|
<lname>HIST_DATM%QIA_CLM60%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50BgcCropRs</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing, not entirely sure this configure works -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcDvCrop</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%BGCDV-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing; uses Qian atmospheric forcing simply to give
|
||||||
|
faster datm throughput, which is particularly relevant for single-point
|
||||||
|
cases (where datm dominates the runtime) -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50BgcDvCropQianRs</alias>
|
||||||
|
<lname>2000_DATM%QIA_CLM50%BGCDV-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- I cpl history MOAR forcing spinup compsets -->
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcSpinup</alias>
|
||||||
|
<lname>1850_DATM%CPLHIST_CLM50%BGC_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- I CLM50 NWP Compsets -->
|
||||||
|
|
||||||
|
<!-- GSWP datm forcing, for global runs or regional runs outside the CONUS -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Ctsm50NwpSpGswp</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%NWP-SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Ctsm50NwpBgcCropGswp</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%NWP-BGC-CROP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- NLDAS datm forcing, for regional runs over the CONUS, e.g., using
|
||||||
|
the nldas grid -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Ctsm50NwpSpNldas</alias>
|
||||||
|
<lname>2000_DATM%NLDAS2_CLM50%NWP-SP_SICE_SOCN_MOSART_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- NLDAS datm forcing, for regional runs over the CONUS, e.g., using
|
||||||
|
the nldas grid; stub ROF to improve performance -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Ctsm50NwpSpNldasRs</alias>
|
||||||
|
<lname>2000_DATM%NLDAS2_CLM50%NWP-SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- I CLM45 Compsets -->
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm45BgcCrop</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM45%BGC-CROP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm45BgcCru</alias>
|
||||||
|
<lname>1850_DATM%CRUv7_CLM45%BGC_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm45BgcCrop</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM45%BGC-CROP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing; uses Qian atmospheric forcing simply to give
|
||||||
|
faster datm throughput, which is particularly relevant for single-point
|
||||||
|
cases (where datm dominates the runtime) -->
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm45BgcCropQianRs</alias>
|
||||||
|
<lname>HIST_DATM%QIA_CLM45%BGC-CROP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm45Sp</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM45%SP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm45BgcCrop</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM45%BGC-CROP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm45Fates</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM45%FATES_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Stub rof needed for regional / single-point -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm45FatesRs</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM45%FATES_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm45Bgc</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM45%BGC_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm45Bgc</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM45%BGC_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm45BgcCru</alias>
|
||||||
|
<lname>HIST_DATM%CRUv7_CLM45%BGC_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm45Sp</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM45%SP_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
<science_support grid="f09_g17"/>
|
||||||
|
<science_support grid="f19_g17"/>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Primarily for testing -->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm50Vic</alias>
|
||||||
|
<lname>2000_DATM%GSWP3v1_CLM50%SP-VIC_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Clm45VicCru</alias>
|
||||||
|
<lname>2000_DATM%CRUv7_CLM45%SP-VIC_SICE_SOCN_RTM_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
IG compsets with active Glacier model
|
||||||
|
-->
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50SpG</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_CISM2%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50SpGa</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_CISM2%AIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50SpGag</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_CISM2%AIS-EVOLVE%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50SpG</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_MOSART_CISM2%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50BgcCropG</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_CISM2%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>IHistClm50BgcCropG</alias>
|
||||||
|
<lname>HIST_DATM%GSWP3v1_CLM50%BGC-CROP_SICE_SOCN_MOSART_CISM2%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- Latest CLM version -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60BgcCropG</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%BGC-CROP_SICE_SOCN_MOSART_CISM2%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
<!-- Needed for testing until removed by CESM -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm51BgcCropG</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM51%BGC-CROP_SICE_SOCN_MOSART_CISM2%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- Primarily for testing: same as I1850Clm50SpGag but with SROF -->
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm50SpRsGag</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM50%SP_SICE_SOCN_SROF_CISM2%AIS-EVOLVE%GRIS-EVOLVE_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<compset>
|
||||||
|
<alias>I1850Clm60SpRs</alias>
|
||||||
|
<lname>1850_DATM%GSWP3v1_CLM60%SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
|
||||||
|
<!-- For LILAC. Uses a stub atmosphere to avoid needing to download
|
||||||
|
datm input data. (That avoidance is just needed for the compset
|
||||||
|
used in the LILAC system tests: it's not an issue in the
|
||||||
|
build_ctsm workflow. In principle we could use a different
|
||||||
|
compset in build_ctsm than the one used in the LILAC system
|
||||||
|
tests, but it seems most intuitive to use the same compset for
|
||||||
|
both purposes.)
|
||||||
|
-->
|
||||||
|
<compset>
|
||||||
|
<alias>I2000Ctsm50NwpSpAsRs</alias>
|
||||||
|
<lname>2000_SATM_CLM50%NWP-SP_SICE_SOCN_SROF_SGLC_SWAV</lname>
|
||||||
|
</compset>
|
||||||
|
|
||||||
|
<!-- changes to driver xml variables - in case of a tie in the values matches the last match is taken -->
|
||||||
|
|
||||||
|
<entries>
|
||||||
|
<entry id="RUN_STARTDATE">
|
||||||
|
<values>
|
||||||
|
<value compset="HIST_" >1850-01-01</value>
|
||||||
|
<value compset="2000_" >2000-01-01</value>
|
||||||
|
<value compset="2010_" >2010-01-01</value>
|
||||||
|
<value compset="SSP" >2015-01-01</value>
|
||||||
|
<value compset="CLM[45].*_CISM.*_TEST" >1980-01-15</value>
|
||||||
|
<value compset="CLM[45]%[^_]*CNDV.*_TEST" >1997-12-31</value>
|
||||||
|
<value grid="a%1x1_mexicocityMEX" >1993-12-01</value>
|
||||||
|
<value grid="a%1x1_vancouverCAN" >1992-08-12</value>
|
||||||
|
<value grid="a%1x1_urbanc_alpha" >0001-08-12</value>
|
||||||
|
</values>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="STOP_OPTION">
|
||||||
|
<values>
|
||||||
|
<value grid="a%1x1_mexicocityMEX">nsteps</value>
|
||||||
|
<value grid="a%1x1_vancouverCAN" >nsteps</value>
|
||||||
|
<value grid="a%1x1_urbanc_alpha" >nsteps</value>
|
||||||
|
</values>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
<entry id="STOP_N">
|
||||||
|
<values>
|
||||||
|
<value grid="a%1x1_mexicocityMEX">158</value>
|
||||||
|
<value grid="a%1x1_vancouverCAN" >331</value>
|
||||||
|
<value grid="a%1x1_urbanc_alpha" >22772</value>
|
||||||
|
</values>
|
||||||
|
</entry>
|
||||||
|
|
||||||
|
</entries>
|
||||||
|
|
||||||
|
</compsets>
|
||||||
1975
cime_config/config_pes.xml
Normal file
1975
cime_config/config_pes.xml
Normal file
File diff suppressed because it is too large
Load Diff
166
cime_config/config_tests.xml
Normal file
166
cime_config/config_tests.xml
Normal file
@ -0,0 +1,166 @@
|
|||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
This defines various CTSM-specific system tests
|
||||||
|
-->
|
||||||
|
|
||||||
|
<config_test>
|
||||||
|
|
||||||
|
<test NAME="FUNITCTSM">
|
||||||
|
<DESC>Run CTSM's Fortran unit tests. Grid and compset (and most case settings) are ignored.</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<STOP_OPTION>ndays</STOP_OPTION>
|
||||||
|
<STOP_N>11</STOP_N>
|
||||||
|
<CHECK_TIMING>FALSE</CHECK_TIMING>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="MKSURFDATAESMF">
|
||||||
|
<DESC>Build and run the mksurfdata_esmf tool to generate a new fsurdat; then run the CTSM with this fsurdat</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="FSURDATMODIFYCTSM">
|
||||||
|
<DESC>Run the CTSM with an fsurdat generated by the fsurdat_modify tool</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LGRAIN2">
|
||||||
|
<DESC>CTSM Land model test to ensure that we can allocate and use a second grain pool</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LREPRSTRUCT">
|
||||||
|
<DESC>CTSM Land model test to ensure that we can allocate and use a reproductive structure pool</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LII">
|
||||||
|
<DESC>CLM initial condition interpolation test (requires configuration with non-blank finidat)</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LII2FINIDATAREAS">
|
||||||
|
<DESC>CLM initial condition interpolation test using finidat_areas (requires configuration with non-blank finidat)</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LILACSMOKE">
|
||||||
|
<DESC>CTSM test: Smoke test of building and running CTSM via LILAC. Grid and compset (and most case settings) are ignored.</DESC>
|
||||||
|
<!-- Many of the options are irrelevant here, but we define them for consistency with other tests -->
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<STOP_OPTION>ndays</STOP_OPTION>
|
||||||
|
<STOP_N>11</STOP_N>
|
||||||
|
<CHECK_TIMING>FALSE</CHECK_TIMING>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LVG">
|
||||||
|
<DESC>CLM test: Verify that adding virtual glacier columns doesn't change answers</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<!-- Need HIST_OPTION=never for this test because we expect answer changes
|
||||||
|
in the l2x fields that are separated by elevation class. So for this
|
||||||
|
test, we just ensure that there are no answer changes in
|
||||||
|
gridcell-average CLM fields, via comparison of the CLM history
|
||||||
|
files. This means that, for this test to be effective, it needs to be
|
||||||
|
done with a testmod that produces at least one CLM history file, which
|
||||||
|
should only contain gridcell-average fields. (If we had a way to
|
||||||
|
exclude individual fields from the list of compared fields, then we
|
||||||
|
could compare cpl hist files, excluding certain l2x fields.) -->
|
||||||
|
<HIST_OPTION>never</HIST_OPTION>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LCISO">
|
||||||
|
<DESC>CTSM Land model test to ensure Carbon isotopes on or off does NOT change answers</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="LWISO">
|
||||||
|
<DESC>CTSM Land model test to ensure Water isotopes on or off does NOT change answers</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="RXCROPMATURITY">
|
||||||
|
<DESC>Generate prescribed maturity requirements, then test with them</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<!--
|
||||||
|
SSP smoke CLM spinup test (only valid for CLM compsets with CLM45)
|
||||||
|
do an initial spin test (setting CLM_ACCELERATED_SPINUP to on)
|
||||||
|
write restarts at the end of the run
|
||||||
|
short term archiving is on
|
||||||
|
do a hybrid non-spinup simulation run from the restart files generated in the first phase
|
||||||
|
-->
|
||||||
|
|
||||||
|
<test NAME="SSP">
|
||||||
|
<DESC>smoke CLM spinup test</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<STOP_OPTION>ndays</STOP_OPTION>
|
||||||
|
<RUN_TYPE>startup</RUN_TYPE>
|
||||||
|
<STOP_N>4</STOP_N>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test NAME="SOILSTRUCTUD">
|
||||||
|
<DESC>CLM user-defined soil structure test</DESC>
|
||||||
|
<INFO_DBUG>1</INFO_DBUG>
|
||||||
|
<DOUT_S>FALSE</DOUT_S>
|
||||||
|
<CONTINUE_RUN>FALSE</CONTINUE_RUN>
|
||||||
|
<REST_OPTION>never</REST_OPTION>
|
||||||
|
<HIST_OPTION>$STOP_OPTION</HIST_OPTION>
|
||||||
|
<HIST_N>$STOP_N</HIST_N>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
</config_test>
|
||||||
284
cime_config/testdefs/ExpectedTestFails.xml
Normal file
284
cime_config/testdefs/ExpectedTestFails.xml
Normal file
@ -0,0 +1,284 @@
|
|||||||
|
<?xml version= "1.0"?>
|
||||||
|
|
||||||
|
<expectedFails version="1.1">
|
||||||
|
|
||||||
|
<!-- Notes about the format of this file:
|
||||||
|
|
||||||
|
The required elements for a given failure are just:
|
||||||
|
|
||||||
|
<test name="...">
|
||||||
|
<phase name="...">
|
||||||
|
<status>...</status>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
There can be multiple phase blocks in a given test block.
|
||||||
|
|
||||||
|
In addition, a number of optional elements are allowed, which
|
||||||
|
currently are just for human consumption (not parsed by any
|
||||||
|
scripts):
|
||||||
|
|
||||||
|
- A phase block can contain an "issue" element, which gives the
|
||||||
|
issue number associated with this failure. (#123 refers to issue
|
||||||
|
#123 in the ESCOMP/ctsm repository. Issues in other repositories
|
||||||
|
should be specified as ORG/repo#123 - e.g., ESMCI/cime#123.)
|
||||||
|
|
||||||
|
- A phase block can contain a "comment" element, which gives any
|
||||||
|
sort of comment you desire.
|
||||||
|
-->
|
||||||
|
|
||||||
|
|
||||||
|
<!-- ctsm_sci test suite failures -->
|
||||||
|
<test name="RXCROPMATURITY_Lm61.f09_g17.IHistClm50BgcCrop.derecho_intel.clm-cropMonthOutput">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>PEND</status>
|
||||||
|
<issue>#2460</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld12_Mmpi-serial.1x1_urbanc_alpha.I1PtClm60SpRs.derecho_intel.clm-output_sp_highfreq">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>CDEPS/#243</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<!-- aux_clm test suite failures -->
|
||||||
|
<test name="SMS_D_Ld10.f10_f10_mg37.I2000Clm50BgcCrop.izumi_intel.clm-tracer_consistency">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2444</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_D_Ld1_Mmpi-serial_Vmct.f45_f45_mg37.I2000Clm50SpRs.izumi_gnu.clm-ptsRLA">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#1887</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_D.f10_f10_mg37.I2000Clm60BgcCrop.derecho_nvhpc.clm-crop">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#1733</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_gnu.clm-default--clm-NEON-NIWO">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Bgc.derecho_gnu.clm-NEON-MOAB--clm-PRISM">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Fates.derecho_gnu.clm-FatesFireLightningPopDens--clm-NEON-FATES-NIWO">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Fates.derecho_gnu.clm-FatesPRISM--clm-NEON-FATES-YELL">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60SpRs.derecho_gnu.clm-default--clm-NEON-TOOL">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Lm3_D_Mmpi-serial.1x1_brazil.I2000Clm50FatesCruRsGs.izumi_intel.clm-FatesColdHydro">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2373</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Lm3_D_Mmpi-serial.1x1_brazil.I2000Clm50FatesCruRsGs.izumi_nag.clm-FatesColdHydro">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2373</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="FUNITCTSM_P1x1.f10_f10_mg37.I2000Clm50Sp.izumi_intel">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2453</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld15.f45_f45_mg37.I2000Clm50FatesRs.izumi_nag.clm-FatesColdTwoStream">
|
||||||
|
<phase name="CREATE_NEWCASE">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2454</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Fates.izumi_nag.clm-FatesFireLightningPopDens--clm-NEON-FATES-NIWO">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Fates.izumi_nag.clm-FatesPRISM--clm-NEON-FATES-YELL">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<!-- fates test suite failures -->
|
||||||
|
|
||||||
|
<test name="SMS_D_Ld3.f09_g17.I2000Clm60FatesSpCruRsGs.derecho_gnu.clm-FatesColdSatPhen_prescribed">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2321</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld5.1x1_brazil.I2000Clm50FatesCruRsGs.izumi_nag.clm-FatesColdHydro">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2373</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="COMPARE_base_rest">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>FATES#701</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Lm3_D_Mmpi-serial.1x1_brazil.I2000Clm50FatesCruRsGs.derecho_intel.clm-FatesColdHydro">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2373</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld5.1x1_brazil.I2000Clm50FatesCruRsGs.derecho_intel.clm-FatesColdHydro">
|
||||||
|
<phase name="COMPARE_base_rest">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>FATES#701</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERP_P256x2_Ld30.f45_f45_mg37.I2000Clm60FatesRs.derecho_intel.clm-mimicsFatesCold">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2261</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld30.f45_f45_mg37.I2000Clm50FatesCruRsGs.izumi_nag.clm-FatesColdPRT2">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>PEND</status>
|
||||||
|
<issue>FATES#983</issue>
|
||||||
|
<comment>This job should time out on izumi, seems to be hanging on history output.</comment>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="PEM_D_Ld15.f10_f10_mg37.I2000Clm50FatesRs.derecho_gnu.clm-FatesColdSeedDisp">
|
||||||
|
<phase name="COMPARE_base_modpes">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>FATES#1089</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="PEM_D_Ld15.5x5_amazon.I2000Clm50FatesRs.derecho_gnu.clm-FatesColdSeedDisp">
|
||||||
|
<phase name="COMPARE_base_modpes">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>FATES#1089</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_D_Ld5.5x5_amazon.I1850Clm51Bgc.derecho_gnu.clm-HillslopeC">
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2423</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld15.f45_f45_mg37.I2000Clm50FatesRs.derecho_intel.clm-FatesColdTwoStream">
|
||||||
|
<phase name="COMPARE_base_rest">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2325</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld15.f45_f45_mg37.I2000Clm50FatesRs.izumi_nag.clm-FatesColdTwoStream">
|
||||||
|
<phase name="COMPARE_base_rest">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2325</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="ERS_D_Ld15.f45_f45_mg37.I2000Clm50FatesRs.derecho_gnu.clm-FatesColdTwoStreamNoCompFixedBioGeo">
|
||||||
|
<phase name="COMPARE_base_rest">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2325</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<test name="SMS_Ld10_D_Mmpi-serial.CLM_USRDAT.I1PtClm60Fates.derecho_intel.clm-FatesFireLightningPopDens--clm-NEON-FATES-NIWO">
|
||||||
|
<phase name="SHAREDLIB_BUILD">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
<phase name="RUN">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>#2310</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
<!-- Other external test list failures (MOSART, RTM, etc. -->
|
||||||
|
|
||||||
|
<test name="SMS_Lh3.f10_f10_mg37.I2000Clm51Sp.derecho_intel.mosart-clmAccelSpinupIgnoreWarn">
|
||||||
|
<phase name="CREATE_NEWCASE">
|
||||||
|
<status>FAIL</status>
|
||||||
|
<issue>MOSART#91</issue>
|
||||||
|
</phase>
|
||||||
|
</test>
|
||||||
|
|
||||||
|
</expectedFails>
|
||||||
3689
cime_config/testdefs/testlist_clm.xml
Normal file
3689
cime_config/testdefs/testlist_clm.xml
Normal file
File diff suppressed because it is too large
Load Diff
@ -0,0 +1 @@
|
|||||||
|
../default
|
||||||
@ -0,0 +1,5 @@
|
|||||||
|
#!/bin/bash
|
||||||
|
|
||||||
|
./xmlchange CLM_ACCELERATED_SPINUP="on"
|
||||||
|
./xmlchange MOSART_MODE="NULL"
|
||||||
|
|
||||||
@ -0,0 +1,16 @@
|
|||||||
|
#!/bin/bash
|
||||||
|
|
||||||
|
if [ "`./xmlquery ATM_GRID --value`" == "1x1_vancouverCAN" ]; then
|
||||||
|
# Go one day in, so don't have to set the TOD as well
|
||||||
|
./xmlchange RUN_STARTDATE="1992-08-13"
|
||||||
|
elif [ "`./xmlquery ATM_GRID --value`" == "1x1_mexicocityMEX" ]; then
|
||||||
|
# Go one day in, so don't have to set the TOD as well
|
||||||
|
./xmlchange RUN_STARTDATE="1993-12-02"
|
||||||
|
elif [ "`./xmlquery ATM_GRID --value`" == "1x1_urbanc_alpha" ]; then
|
||||||
|
# Go one day in, so don't have to set the TOD as well
|
||||||
|
./xmlchange RUN_STARTDATE="0001-08-13"
|
||||||
|
#
|
||||||
|
# Otherwise let this be set by the specific site
|
||||||
|
#
|
||||||
|
fi
|
||||||
|
|
||||||
@ -0,0 +1 @@
|
|||||||
|
../default
|
||||||
@ -0,0 +1,6 @@
|
|||||||
|
# Test Data Assimilation with multi-driver on
|
||||||
|
./xmlchange LND_DATA_ASSIMILATION=TRUE
|
||||||
|
./xmlchange MULTI_DRIVER=TRUE
|
||||||
|
|
||||||
|
# Set calendar, just because Gregorian is ussually used for DA
|
||||||
|
./xmlchange CALENDAR=GREGORIAN
|
||||||
@ -0,0 +1,13 @@
|
|||||||
|
! Settings being used for DART cases
|
||||||
|
hist_empty_htapes = .true.
|
||||||
|
hist_fincl1 = 'NEP','TOTECOSYSC','TOTVEGC','TLAI'
|
||||||
|
hist_fincl2 = 'NEP','FSH','EFLX_LH_TOT_R'
|
||||||
|
hist_fincl3 = 'TV','TLAI','PBOT','TBOT','TSA','RH2M_R','SNOWDP'
|
||||||
|
hist_nhtfrq = -24,1,-24
|
||||||
|
hist_mfilt = 1,48,1
|
||||||
|
hist_avgflag_pertape = 'A','A','I'
|
||||||
|
hist_dov2xy = .true.,.true.,.false.
|
||||||
|
hist_type1d_pertape = ' ',' ',' '
|
||||||
|
|
||||||
|
use_init_interp = .true.
|
||||||
|
finidat = '/glade/campaign/cisl/dares/glade-p-dares-Oct2023/RDA_strawman/CESM_ensembles/CLM/CLM5BGC-Crop/ctsm_2001-01-01-00000/clm5_f09_spinup80.clm2_0001.r.2001-01-01-00000.nc'
|
||||||
@ -0,0 +1,13 @@
|
|||||||
|
! Settings being used for DART cases
|
||||||
|
hist_empty_htapes = .true.
|
||||||
|
hist_fincl1 = 'NEP','TOTECOSYSC','TOTVEGC','TLAI'
|
||||||
|
hist_fincl2 = 'NEP','FSH','EFLX_LH_TOT_R'
|
||||||
|
hist_fincl3 = 'TV','TLAI','PBOT','TBOT','TSA','RH2M_R','SNOWDP'
|
||||||
|
hist_nhtfrq = -24,1,-24
|
||||||
|
hist_mfilt = 1,48,1
|
||||||
|
hist_avgflag_pertape = 'A','A','I'
|
||||||
|
hist_dov2xy = .true.,.true.,.false.
|
||||||
|
hist_type1d_pertape = ' ',' ',' '
|
||||||
|
|
||||||
|
use_init_interp = .true.
|
||||||
|
finidat = '/glade/campaign/cisl/dares/glade-p-dares-Oct2023/RDA_strawman/CESM_ensembles/CLM/CLM5BGC-Crop/ctsm_2001-01-01-00000/clm5_f09_spinup80.clm2_0002.r.2001-01-01-00000.nc'
|
||||||
@ -0,0 +1,2 @@
|
|||||||
|
../monthly
|
||||||
|
../../../../usermods_dirs/output_sp_exice
|
||||||
@ -0,0 +1,3 @@
|
|||||||
|
use_excess_ice = .true.
|
||||||
|
finidat = '$DIN_LOC_ROOT/lnd/clm2/initdata_map/clmi.I1850Clm50Sp.0003-01-01.0.9x1.25_gx1v7_exice_simyr1850_c221205.nc'
|
||||||
|
use_init_interp = .true.
|
||||||
@ -0,0 +1 @@
|
|||||||
|
../default
|
||||||
@ -0,0 +1,2 @@
|
|||||||
|
use_excess_ice = .true.
|
||||||
|
use_excess_ice_streams = .true.
|
||||||
@ -0,0 +1,2 @@
|
|||||||
|
./xmlchange CLM_BLDNML_OPTS="-no-megan" --append
|
||||||
|
./xmlchange BFBFLAG="TRUE"
|
||||||
30
cime_config/testdefs/testmods_dirs/clm/Fates/user_nl_clm
Normal file
30
cime_config/testdefs/testmods_dirs/clm/Fates/user_nl_clm
Normal file
@ -0,0 +1,30 @@
|
|||||||
|
!! USES THE DEFAULT INITIALIZATION FILE SPECIFIED IN bld/namelist_files/namelist_defaults_ctsm.xml
|
||||||
|
hist_mfilt = 365
|
||||||
|
hist_nhtfrq = -24
|
||||||
|
hist_empty_htapes = .true.
|
||||||
|
hist_ndens = 1
|
||||||
|
fates_spitfire_mode = 1
|
||||||
|
hist_fincl1 = 'FATES_NCOHORTS', 'FATES_TRIMMING', 'FATES_AREA_PLANTS',
|
||||||
|
'FATES_AREA_TREES', 'FATES_COLD_STATUS', 'FATES_GDD',
|
||||||
|
'FATES_NCHILLDAYS', 'FATES_NCOLDDAYS', 'FATES_DAYSINCE_COLDLEAFOFF','FATES_DAYSINCE_COLDLEAFON',
|
||||||
|
'FATES_CANOPY_SPREAD', 'FATES_NESTEROV_INDEX', 'FATES_IGNITIONS', 'FATES_FDI',
|
||||||
|
'FATES_ROS','FATES_EFFECT_WSPEED', 'FATES_FUELCONSUMED', 'FATES_FIRE_INTENSITY',
|
||||||
|
'FATES_FIRE_INTENSITY_BURNFRAC', 'FATES_BURNFRAC', 'FATES_FUEL_MEF',
|
||||||
|
'FATES_FUEL_BULKD', 'FATES_FUEL_EFF_MOIST', 'FATES_FUEL_SAV',
|
||||||
|
'FATES_FUEL_AMOUNT', 'FATES_LITTER_IN', 'FATES_LITTER_OUT',
|
||||||
|
'FATES_SEED_BANK', 'FATES_SEEDS_IN', 'FATES_STOREC', 'FATES_VEGC',
|
||||||
|
'FATES_SAPWOODC', 'FATES_LEAFC', 'FATES_FROOTC', 'FATES_REPROC',
|
||||||
|
'FATES_STRUCTC', 'FATES_NONSTRUCTC', 'FATES_VEGC_ABOVEGROUND',
|
||||||
|
'FATES_CANOPY_VEGC', 'FATES_USTORY_VEGC', 'FATES_PRIMARY_PATCHFUSION_ERR',
|
||||||
|
'FATES_HARVEST_CARBON_FLUX', 'FATES_DISTURBANCE_RATE_FIRE',
|
||||||
|
'FATES_DISTURBANCE_RATE_LOGGING', 'FATES_DISTURBANCE_RATE_TREEFALL',
|
||||||
|
'FATES_STOMATAL_COND', 'FATES_LBLAYER_COND', 'FATES_NPP', 'FATES_GPP',
|
||||||
|
'FATES_AUTORESP', 'FATES_GROWTH_RESP', 'FATES_MAINT_RESP', 'FATES_GPP_CANOPY',
|
||||||
|
'FATES_AUTORESP_CANOPY', 'FATES_GPP_USTORY', 'FATES_AUTORESP_USTORY',
|
||||||
|
'FATES_DEMOTION_CARBONFLUX', 'FATES_PROMOTION_CARBONFLUX',
|
||||||
|
'FATES_MORTALITY_CFLUX_CANOPY', 'FATES_MORTALITY_CFLUX_USTORY',
|
||||||
|
'FATES_NEP', 'FATES_HET_RESP', 'FATES_FIRE_CLOSS', 'FATES_FIRE_FLUX_EL',
|
||||||
|
'FATES_CBALANCE_ERROR', 'FATES_ERROR_EL', 'FATES_LEAF_ALLOC',
|
||||||
|
'FATES_SEED_ALLOC', 'FATES_STEM_ALLOC', 'FATES_FROOT_ALLOC',
|
||||||
|
'FATES_CROOT_ALLOC', 'FATES_STORE_ALLOC',
|
||||||
|
'FATES_PATCHAREA_LU', 'FATES_DISTURBANCE_RATE_MATRIX_LULU'
|
||||||
@ -0,0 +1 @@
|
|||||||
|
../Fates
|
||||||
@ -0,0 +1 @@
|
|||||||
|
./xmlchange CLM_FORCE_COLDSTART="on"
|
||||||
@ -0,0 +1,3 @@
|
|||||||
|
./xmlchange CLM_BLDNML_OPTS="-no-megan" --append
|
||||||
|
./xmlchange BFBFLAG="TRUE"
|
||||||
|
./xmlchange CLM_FORCE_COLDSTART="on"
|
||||||
@ -0,0 +1,59 @@
|
|||||||
|
!finidat = '$DIN_LOC_ROOT/lnd/clm2/initdata_map/iclm45fates-finit-s1.4.0-a3.0.0-f45.clm2.r.0111-01-01-00000.nc'
|
||||||
|
hist_mfilt = 365
|
||||||
|
hist_nhtfrq = -24
|
||||||
|
hist_empty_htapes = .false.
|
||||||
|
fates_spitfire_mode = 1
|
||||||
|
fates_history_dimlevel = 2,2
|
||||||
|
use_fates_tree_damage = .true.
|
||||||
|
hist_ndens = 1
|
||||||
|
hist_fincl1 = 'FATES_TLONGTERM',
|
||||||
|
'FATES_TGROWTH','FATES_SEEDS_IN_GRIDCELL_PF','FATES_SEEDS_OUT_GRIDCELL_PF','FATES_NCL_AP',
|
||||||
|
'FATES_NPATCH_AP','FATES_VEGC_AP','FATES_SECONDAREA_ANTHRODIST_AP','FATES_SECONDAREA_DIST_AP',
|
||||||
|
'FATES_FUEL_AMOUNT_APFC','FATES_STOREC_TF_USTORY_SZPF','FATES_STOREC_TF_CANOPY_SZPF',
|
||||||
|
'FATES_CROWNAREA_CLLL','FATES_ABOVEGROUND_MORT_SZPF',
|
||||||
|
'FATES_ABOVEGROUND_PROD_SZPF','FATES_NPLANT_SZAP','FATES_NPLANT_CANOPY_SZAP',
|
||||||
|
'FATES_NPLANT_USTORY_SZAP','FATES_DDBH_CANOPY_SZAP','FATES_DDBH_USTORY_SZAP',
|
||||||
|
'FATES_MORTALITY_CANOPY_SZAP','FATES_MORTALITY_USTORY_SZAP','FATES_NPLANT_SZAPPF',
|
||||||
|
'FATES_NPP_APPF','FATES_VEGC_APPF','FATES_SCORCH_HEIGHT_APPF','FATES_GPP_SZPF',
|
||||||
|
'FATES_GPP_CANOPY_SZPF','FATES_AUTORESP_CANOPY_SZPF','FATES_GPP_USTORY_SZPF',
|
||||||
|
'FATES_AUTORESP_USTORY_SZPF','FATES_NPP_SZPF','FATES_LEAF_ALLOC_SZPF',
|
||||||
|
'FATES_SEED_ALLOC_SZPF','FATES_FROOT_ALLOC_SZPF','FATES_BGSAPWOOD_ALLOC_SZPF',
|
||||||
|
'FATES_BGSTRUCT_ALLOC_SZPF','FATES_AGSAPWOOD_ALLOC_SZPF','FATES_AGSTRUCT_ALLOC_SZPF',
|
||||||
|
'FATES_STORE_ALLOC_SZPF','FATES_DDBH_SZPF','FATES_GROWTHFLUX_SZPF','FATES_GROWTHFLUX_FUSION_SZPF',
|
||||||
|
'FATES_DDBH_CANOPY_SZPF','FATES_DDBH_USTORY_SZPF','FATES_BASALAREA_SZPF','FATES_VEGC_ABOVEGROUND_SZPF',
|
||||||
|
'FATES_NPLANT_SZPF','FATES_NPLANT_ACPF','FATES_MORTALITY_BACKGROUND_SZPF','FATES_MORTALITY_HYDRAULIC_SZPF',
|
||||||
|
'FATES_MORTALITY_CSTARV_SZPF','FATES_MORTALITY_IMPACT_SZPF','FATES_MORTALITY_FIRE_SZPF',
|
||||||
|
'FATES_MORTALITY_CROWNSCORCH_SZPF','FATES_MORTALITY_CAMBIALBURN_SZPF','FATES_MORTALITY_TERMINATION_SZPF',
|
||||||
|
'FATES_MORTALITY_LOGGING_SZPF','FATES_MORTALITY_FREEZING_SZPF','FATES_MORTALITY_SENESCENCE_SZPF',
|
||||||
|
'FATES_MORTALITY_AGESCEN_SZPF','FATES_MORTALITY_AGESCEN_ACPF','FATES_MORTALITY_CANOPY_SZPF',
|
||||||
|
'FATES_M3_MORTALITY_CANOPY_SZPF','FATES_M3_MORTALITY_USTORY_SZPF','FATES_C13DISC_SZPF',
|
||||||
|
'FATES_STOREC_CANOPY_SZPF','FATES_LEAFC_CANOPY_SZPF','FATES_LAI_CANOPY_SZPF','FATES_CROWNAREA_CANOPY_SZPF',
|
||||||
|
'FATES_CROWNAREA_USTORY_SZPF','FATES_NPLANT_CANOPY_SZPF','FATES_MORTALITY_USTORY_SZPF','FATES_STOREC_USTORY_SZPF',
|
||||||
|
'FATES_LEAFC_USTORY_SZPF','FATES_LAI_USTORY_SZPF','FATES_NPLANT_USTORY_SZPF','FATES_CWD_ABOVEGROUND_DC',
|
||||||
|
'FATES_CWD_BELOWGROUND_DC','FATES_CWD_ABOVEGROUND_IN_DC','FATES_CWD_BELOWGROUND_IN_DC',
|
||||||
|
'FATES_CWD_ABOVEGROUND_OUT_DC','FATES_CWD_BELOWGROUND_OUT_DC','FATES_YESTCANLEV_CANOPY_SZ',
|
||||||
|
'FATES_YESTCANLEV_USTORY_SZ','FATES_VEGC_SZ','FATES_DEMOTION_RATE_SZ','FATES_PROMOTION_RATE_SZ',
|
||||||
|
'FATES_SAI_CANOPY_SZ','FATES_M3_MORTALITY_CANOPY_SZ','FATES_M3_MORTALITY_USTORY_SZ','FATES_SAI_USTORY_SZ',
|
||||||
|
'FATES_NPP_CANOPY_SZ','FATES_NPP_USTORY_SZ','FATES_TRIMMING_CANOPY_SZ','FATES_TRIMMING_USTORY_SZ',
|
||||||
|
'FATES_CROWNAREA_CANOPY_SZ','FATES_CROWNAREA_USTORY_SZ','FATES_LEAFCTURN_CANOPY_SZ','FATES_FROOTCTURN_CANOPY_SZ',
|
||||||
|
'FATES_STORECTURN_CANOPY_SZ','FATES_STRUCTCTURN_CANOPY_SZ','FATES_SAPWOODCTURN_CANOPY_SZ','FATES_SEED_PROD_CANOPY_SZ',
|
||||||
|
'FATES_LEAF_ALLOC_CANOPY_SZ','FATES_FROOT_ALLOC_CANOPY_SZ','FATES_SAPWOOD_ALLOC_CANOPY_SZ','FATES_STRUCT_ALLOC_CANOPY_SZ',
|
||||||
|
'FATES_SEED_ALLOC_CANOPY_SZ','FATES_STORE_ALLOC_CANOPY_SZ','FATES_LEAFCTURN_USTORY_SZ','FATES_FROOTCTURN_USTORY_SZ',
|
||||||
|
'FATES_STORECTURN_USTORY_SZ','FATES_STRUCTCTURN_USTORY_SZ','FATES_SAPWOODCTURN_USTORY_SZ',
|
||||||
|
'FATES_SEED_PROD_USTORY_SZ','FATES_LEAF_ALLOC_USTORY_SZ','FATES_FROOT_ALLOC_USTORY_SZ','FATES_SAPWOOD_ALLOC_USTORY_SZ',
|
||||||
|
'FATES_STRUCT_ALLOC_USTORY_SZ','FATES_SEED_ALLOC_USTORY_SZ','FATES_STORE_ALLOC_USTORY_SZ','FATES_CROWNAREA_CANOPY_CD',
|
||||||
|
'FATES_CROWNAREA_USTORY_CD','FATES_NPLANT_CDPF','FATES_NPLANT_CANOPY_CDPF','FATES_NPLANT_USTORY_CDPF',
|
||||||
|
'FATES_M3_CDPF','FATES_M11_SZPF','FATES_M11_CDPF','FATES_MORTALITY_CDPF','FATES_M3_MORTALITY_CANOPY_CDPF',
|
||||||
|
'FATES_M3_MORTALITY_USTORY_CDPF','FATES_M11_MORTALITY_CANOPY_CDPF','FATES_M11_MORTALITY_USTORY_CDPF',
|
||||||
|
'FATES_MORTALITY_CANOPY_CDPF','FATES_MORTALITY_USTORY_CDPF','FATES_DDBH_CDPF','FATES_DDBH_CANOPY_CDPF',
|
||||||
|
'FATES_DDBH_USTORY_CDPF','FATES_VEGC_SZPF','FATES_LEAFC_SZPF','FATES_FROOTC_SZPF','FATES_SAPWOODC_SZPF',
|
||||||
|
'FATES_STOREC_SZPF','FATES_REPROC_SZPF','FATES_NPP_AP','FATES_GPP_AP','FATES_RDARK_USTORY_SZ',
|
||||||
|
'FATES_LSTEMMAINTAR_USTORY_SZ','FATES_CROOTMAINTAR_USTORY_SZ','FATES_FROOTMAINTAR_USTORY_SZ','FATES_GROWAR_USTORY_SZ',
|
||||||
|
'FATES_MAINTAR_USTORY_SZ','FATES_RDARK_CANOPY_SZ','FATES_CROOTMAINTAR_CANOPY_SZ','FATES_FROOTMAINTAR_CANOPY_SZ',
|
||||||
|
'FATES_GROWAR_CANOPY_SZ','FATES_MAINTAR_CANOPY_SZ','FATES_LSTEMMAINTAR_CANOPY_SZ','FATES_AUTORESP_SZPF',
|
||||||
|
'FATES_GROWAR_SZPF','FATES_MAINTAR_SZPF','FATES_RDARK_SZPF','FATES_AGSAPMAINTAR_SZPF','FATES_BGSAPMAINTAR_SZPF',
|
||||||
|
'FATES_FROOTMAINTAR_SZPF','FATES_PARSUN_CLLL','FATES_PARSHA_CLLL','FATES_PARSUN_CLLLPF','FATES_PARSHA_CLLLPF',
|
||||||
|
'FATES_PARSUN_CL','FATES_PARSHA_CL','FATES_LAISUN_CLLL','FATES_LAISHA_CLLL','FATES_LAISUN_CLLLPF',
|
||||||
|
'FATES_LAISHA_CLLLPF','FATES_PARPROF_DIR_CLLLPF','FATES_PARPROF_DIF_CLLLPF','FATES_LAISUN_CL','FATES_LAISHA_CL',
|
||||||
|
'FATES_PARPROF_DIR_CLLL','FATES_PARPROF_DIF_CLLL','FATES_NET_C_UPTAKE_CLLL','FATES_CROWNFRAC_CLLLPF',
|
||||||
|
'FATES_LBLAYER_COND_AP','FATES_STOMATAL_COND_AP'
|
||||||
@ -0,0 +1,2 @@
|
|||||||
|
./xmlchange CLM_FORCE_COLDSTART="on"
|
||||||
|
./xmlchange BFBFLAG="TRUE"
|
||||||
Some files were not shown because too many files have changed in this diff Show More
Loading…
x
Reference in New Issue
Block a user